Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1465 ATGGCGACGAGAAATCGCACTCTGCTTTTCAGAAAACACAGAGATGCGTTGAAGGCTGTTCGCATTCCCTCCATTTCTTCGCCGCAGTCCACCTCCTCCCACGGCGGTGGCGGTGGCCCCGTCATCGAATTGGTCAGCACCTCACTTCTCAATCCCAATCGCTCTTACGCTCCGCTTAGTACCGACGATCCTGGTAATTCGAGTCGTGGTCCAAATGCAGTCAATTTGGGGCTACCTCCTGCGTGGGTGGATTTATCGGAAGAAATATCAGCAAATGTGCAACGTGCACGCACAAAAATGGCAGAGTTGGCCAAGGCTCATGCAAAGGCTTTGATGCCGTCATTTGGAGATGGGAAAGAAGATCAACATGCTATCGAGACTCTAACACACGAGATAACTGACTTAATAAAGAGGTCGGAGAAGAGACTCCGGAGACTTTCTGCTTCTGGGCCTTCTGAGGATTCCAATGTCAGGAAAAACGTGCAGCGATCTCTTGCTACTGACCTTCAGAACCTCTCTGTTGAGCTACGCAAGAAACAATCAACTTATTTAAAGCGCCTCAGACTACAGAAAGAGGGTCAAGATGGAGTTGATCTAGAGATCAACTTGAATGGAGGTAAATCAAGATTTGAAGATGATGATTTAGATAATATGGTATTTAATGAGCATCAAATGGCCAAGCTGAAGAAAAGTGAAGCATTCACAGTAGAAAGAGAAAAAGAGATCCAGCAGGTTGTGGAATCTGTGAACGAGCTTGCTCAGATCATGAAGGATTTATCAGTACTAGTCATAGACCAGGGAACCATCGTCGATAGAATAGACTACAACATTCAGAATGTTGCAACCACAGTTGAGGATGGGCTTAAACAGCTGCAGAAGGCAGAGAGAACTCAGAAAAAAGGCGGTATGGTAATGTGTGCTACTGTGCTTGTCATCATGTGCTTCGTAATGTTGGTTCTCTTAATCATTAAGGAAATTATTTTGTGA 987 0.4519 MATRNRTLLFRKHRDALKAVRIPSISSPQSTSSHGGGGGPVIELVSTSLLNPNRSYAPLSTDDPGNSSRGPNAVNLGLPPAWVDLSEEISANVQRARTKMAELAKAHAKALMPSFGDGKEDQHAIETLTHEITDLIKRSEKRLRRLSASGPSEDSNVRKNVQRSLATDLQNLSVELRKKQSTYLKRLRLQKEGQDGVDLEINLNGGKSRFEDDDLDNMVFNEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCATVLVIMCFVMLVLLIIKEIIL* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1465 328 SUPERFAMILY t-snare proteins 78 287 IPR010989 GO:0016020|GO:0016192
Vra8g1465 328 MobiDBLite consensus disorder prediction 46 73 - -
Vra8g1465 328 CDD SNARE_syntaxin16 237 293 - -
Vra8g1465 328 ProSitePatterns Syntaxin / epimorphin family signature. 238 277 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vra8g1465 328 SMART tSNARE_6 227 294 IPR000727 -
Vra8g1465 328 SMART SynN_4 73 188 IPR006011 GO:0016020
Vra8g1465 328 Pfam SNARE domain 268 320 IPR000727 -
Vra8g1465 328 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 232 294 IPR000727 -
Vra8g1465 328 PANTHER SYNTAXIN 1 323 IPR045242 -
Vra8g1465 328 Gene3D - 79 286 - -
Vra8g1465 328 Coils Coil 86 106 - -
Vra8g1465 328 PANTHER TARGET SNARE COILED-COIL-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 323 - -
Vra8g1465 328 MobiDBLite consensus disorder prediction 22 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1465 Vra-Chr8 31557904 31563407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1465 1 317 SNARE and Associated Proteins AT3G05710 76.852 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1465 K08489 - gmx:100796741 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0744 3 7729930 7734518 Vra8g1465 8 31557904 31563407 ECH
Vra8g1465 8 31557904 31563407 Vra8g1465 8 31557904 31563407 ECH