LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra8g1460	ATGGTCTCAAATAATAAGCAAACTTTCGAGGGGAATGAAATTGGTGAGCGCAGAGGTAACAGAATACCAATTATGCAATCTAGACAGAGACATAATGATCCAAAACAAGCACCTCTTAGAAATGTGAGAAAAGGGGTGTGGCCCAAGGACTATGAGTTGTACTTTGAACGTTTCTTTCGAAAAGTGGTACGCGAGGAGTTGGAACGTAGAATCCAAGATTACTTACCTGCAAGGGCATGGTTTGATCAGATTGGCGGTGATACGTCGAGAGCATCGCCCTTTGAGCTGCGTTTCACTAATAAATTGCCTGATATAATTTTTACCCACTCTAACGTGATATCAGAGGATAAAACACCCATTCAAATTGCTCTCTTTGATGTCAGAGACCAGTCAGTGGTTAATGTTGGTCCCCTCTCCTCTGCAAAGGTAGAAATCTGTGCCCTCAATGGCGAGTTCGGTTTCAGTGGAAGTGAGGATTGGACTGAAGGTGAATTCAATGTCAATATCTTGCGTGAGAGAGATGGCCGAAGACCATTGTTGAATGGAGATAGACTTATAACATTGAAAAACGGAGTAGGTTGTATCAATAAAGTTATGTTCACGGATAATTCAAGGTGGATACGGAGCAGAAAGTTTAGGTTGGGAGCCAAAGTTATCCAAACAACTTCTAACGAAGCTAACATTAAGGAAGGTAGAAGCGAACCTTTTGTAGTCAAAGATTACAGAGGAGAATCTTACAAGAAACACCACCCTCCTTCCCTGAAGGATGACGTTTGGAGATTAAAACAAATTGCCAAAGATGGAAAAATTCACAAGAGGCTGTCCCTCCAGGGAATTCACACCGTGAAGGACCTTTTGCGGTTATACACAACAAATCCATCTTTGTTACTTGAGAAGGTTGGCAACATTTCAAAGAGATCATGGATGTCAATTATTGAACATGTCAAGACTTGTGTGATAGATGACGACGAGACTTTCTTATACCAGGAACAATCTACCAGTTTGATTTTCAATTCCATCTATGTCCTTGTGGGTGTGAGTTTTGATGGACAAAATTATGTATCCCCTAATACTCTTAGCTCCGATGAGAAGCTTGTGGTGGAAATAATGAAGCAGCATGCTTACCAAAATATGGATAATCTCATATCAGTTCACAAGACACCACTGAGCTGCTTAACACCATTGGCATGTGTAGGAGTGAGACAGTCTGATGCTACAGAGCAAGGTCTTCAACAGTTAGATATCTCTGCAGAACAAAATGGTCATGGTCACCCGTATGCCTCAACTTCATATGGGGAAGAAGACCTTCACAGTCACAATATCTACTCTGATCCAAATTCAATGTCAGACATAACAGACAAAATGTGTCTATTAGAGTATGTAGGCTTTGGTTGGTTTCCATAG	1404	0.411	MVSNNKQTFEGNEIGERRGNRIPIMQSRQRHNDPKQAPLRNVRKGVWPKDYELYFERFFRKVVREELERRIQDYLPARAWFDQIGGDTSRASPFELRFTNKLPDIIFTHSNVISEDKTPIQIALFDVRDQSVVNVGPLSSAKVEICALNGEFGFSGSEDWTEGEFNVNILRERDGRRPLLNGDRLITLKNGVGCINKVMFTDNSRWIRSRKFRLGAKVIQTTSNEANIKEGRSEPFVVKDYRGESYKKHHPPSLKDDVWRLKQIAKDGKIHKRLSLQGIHTVKDLLRLYTTNPSLLLEKVGNISKRSWMSIIEHVKTCVIDDDETFLYQEQSTSLIFNSIYVLVGVSFDGQNYVSPNTLSSDEKLVVEIMKQHAYQNMDNLISVHKTPLSCLTPLACVGVRQSDATEQGLQQLDISAEQNGHGHPYASTSYGEEDLHSHNIYSDPNSMSDITDKMCLLEYVGFGWFP*	468

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra8g1460	467	Pfam	Calmodulin binding protein C-terminal domain	325	383	IPR046829	-
	Vra8g1460	467	PANTHER	OS02G0177800 PROTEIN	1	453	IPR012416	GO:0005516
	Vra8g1460	467	Pfam	Calmodulin binding protein central domain	253	318	IPR046830	-
	Vra8g1460	467	PANTHER	CALMODULIN-BINDING PROTEIN	1	453	-	-
	Vra8g1460	467	MobiDBLite	consensus disorder prediction	1	37	-	-
	Vra8g1460	467	Pfam	Calmodulin binding protein-like N-terminal domain	95	240	IPR046831	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra8g1460	Vra-Chr8	31531957	31534502	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra8g1460	51	385	Calmodulin-binding Proteins	AT5G26920	41.449	4.61e-82	258

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra8g1460	-		-	var:108325503	882.478