Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1456 ATGGGAAGCTGTAGCAGGAAGAAAAACCAAGATCTGGAGTTAGAGAAAGCTCGCTTAATCAGTTTAGCACTCGAATTCGGTTTTGACGAATCCTCCGCCAACAAATGCCTCCACCGTCTCATCGATCTCTACGGAGAAGACGGTCGCGATTTCGTCACCGTCGAGCACTGCGGCGACGATTTTATCGCGACTCTAGCGGAGTCTATGCAGGCTACTGAAGATTGGGATGACCTTCAGGAAATGGAATCACAAGCGTGCGGAACCTTGACGCACGTGCTTGACAAAACCGTTGCTCCGGATGCCGATGCGGATAACGAGGACGCTTCGAGAAACTACATTAATGTTGTTGACGACTCGCCTCAACCGCAGAAACGCAAATGCCGCGCTAATGTAGTGGAGTTGGATTTGAGTGACGATGAGGATATTCACTGTAGTGTTCCGAGGGGAAAATCTGTGGATTACAGAAGTGGCATCACTCAAGGCTCGGTTTCATCAACTTCCAGCAAAATGCAATCCTCCTTTGCATCAAGGGATAAAAGTGGTACTCTCACTTATGAAGAATTGCAAGCTCTAGATGATATTGAATTGGCCAATGTTGTTATCTTTGGTAATAGTACATTTCGACCATTGCAGCATCAAGCATGTAAAGTAGCTTTGGCAAAGCAAGATTCCTTTATTCTTATGCCTACTGGGGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCAACTCTTCAACCAGGTGTCACCGTAGTTGTATCTCCATTACTCTCACTCATTCAGGATCAGATAATAACACTAAACCTCAAGTTTGGAATACCTGCTACTTTCTTAAATTCTCAACAAACTGCTTCCCAGGCCACAGCCGTGCTCCAAGAGCTAAGAAAAGACAAACCATCGTGCAAACTTTTATATGTAACACCCGAGAGAATTGCTGGCAACCAATCGTTTCAGGAGATTCTGAAATGCATGCATCGGAAGGGACAACTAGCAGGTTTTGTTGTTGATGAGGCACACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGATTATCGGGGATTGGGATCTCTAAAGCAAAAGTTTCCAGATGTACCCGTCATGGCATTGACTGCCACTGCAACCCATGCAGTTCGTGAGGACATATTAAATGCTCTAAGAATTCCCCATGCACTCGTTCTTGAAAGAAGCTTTGACAGACCAAATTTGAAGTATGAAGTGATTGGTAAGACAAAGGAACCACTAAAGCAACTCGGACAGCTACTAATTGATCGCTTCAGGAATCAGTGTGGAATTGTTTACTGCCTTTCAAAAAGTGAATGTGTTGAGGTCTCTAAATTTTTAAATGAGAAATGCAAGATCAAAACAGTGTATTACCATGCTGGCTTGGCTGCCCGGCAGAGAATAGCTGTTCAAAAGAAATGGCATGACGGGGAGGTCCATATTGTGTGTGCAACCATTGCTTTTGGAATGGGGATAGACAAACCTGATGTTCGCTTCGTCGTCCACAATACAATGTCAAAATCTATTGAAAGCTATTATCAAGAATCTGGAAGGGCCGGAAGAGATAATCTTCCTTCAGTTTGCATTGTTCTTTACCAAAAGAAGGATTTTAGTAGAGTTGTATGCATGATAAGAAATGGTCAGGGATATAAAAAGGAAAGTTTTAAGACAGCAATGGTTCAAGCCAAAAAGATGCAAGAGTACTGTGAAATAGAGGTTGAATGCCGGAGACAAACTTTACTCAAACACTTCGGAGAATTTTTTGATAGAAAATCTTGCAAGTATGGATCTAGCCCCTGTGATAACTGTATCAAGACTGTATTATGA 1827 0.4313 MGSCSRKKNQDLELEKARLISLALEFGFDESSANKCLHRLIDLYGEDGRDFVTVEHCGDDFIATLAESMQATEDWDDLQEMESQACGTLTHVLDKTVAPDADADNEDASRNYINVVDDSPQPQKRKCRANVVELDLSDDEDIHCSVPRGKSVDYRSGITQGSVSSTSSKMQSSFASRDKSGTLTYEELQALDDIELANVVIFGNSTFRPLQHQACKVALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTASQATAVLQELRKDKPSCKLLYVTPERIAGNQSFQEILKCMHRKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQKFPDVPVMALTATATHAVREDILNALRIPHALVLERSFDRPNLKYEVIGKTKEPLKQLGQLLIDRFRNQCGIVYCLSKSECVEVSKFLNEKCKIKTVYYHAGLAARQRIAVQKKWHDGEVHIVCATIAFGMGIDKPDVRFVVHNTMSKSIESYYQESGRAGRDNLPSVCIVLYQKKDFSRVVCMIRNGQGYKKESFKTAMVQAKKMQEYCEIEVECRRQTLLKHFGEFFDRKSCKYGSSPCDNCIKTVL* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1456 608 Gene3D - 399 607 IPR027417 -
Vra8g1456 608 SMART ultradead3 203 407 IPR014001 -
Vra8g1456 608 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 416 566 IPR001650 -
Vra8g1456 608 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 201 606 IPR004589 GO:0004386|GO:0006310
Vra8g1456 608 Gene3D - 164 398 IPR027417 -
Vra8g1456 608 CDD DEXHc_RecQ 201 398 - -
Vra8g1456 608 Pfam DEAD/DEAH box helicase 209 377 IPR011545 GO:0003676|GO:0005524
Vra8g1456 608 CDD SF2_C_RecQ 399 532 - -
Vra8g1456 608 Pfam RecQ zinc-binding 535 603 IPR032284 -
Vra8g1456 608 PANTHER DNA HELICASE RECQ FAMILY MEMBER 32 606 - -
Vra8g1456 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 544 IPR027417 -
Vra8g1456 608 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 215 391 IPR014001 -
Vra8g1456 608 PANTHER BLOOM SYNDROME PROTEIN 32 606 - -
Vra8g1456 608 Pfam Helicase conserved C-terminal domain 415 522 IPR001650 -
Vra8g1456 608 SMART helicmild6 441 523 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1456 Vra-Chr8 31482718 31489249 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1456 421 521 Eukaryotic Initiation Factors Gene Family AT5G11170 30.693 7.53e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1456 K10899 - gmx:100806070 1085.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1456 8 31482718 31489249 Vra8g1456 8 31482718 31489249 ECH