Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1435 ATGGCTTCTTCTTCTACCATACCTATCTCTTCTCCCATTTCCATATTCAAAAACCCCTCTCTCCAACTCCTCAGAAGACCAACCAACTCCGTTTCATTCAACACCCTTCCCCGTAACCCCACGCTCTCTTCCGTTACTTCAGCCATTACCACCCCCATTTCTTCCGTTCTCACCCAACAATCTTTCGAGGGCTTAACTCTGGACGACGTTAGCAATGGCCTCCAATTTGGCTATGATCACCAACCCGACCACGTCAGCGACCACGAACTTGACATTTCCAAGTTGTCTTTACCTTCCTCCCTCGTTCACGCGCTACAAAAACGTGGAATAACAAGCCTCTTTCCCATTCAGAGAGCTGTGTTAGTGCCTGCATTAGAAGGTAGAGATATCATTGCTCGAGCAAAGACCGGCACTGGCAAAACATTAGCATTCGGAATTCCAATTCTCAGAGGTCTCACTCATGATGATGAGCAAAGTTCTCACAGGAGGCATAGCAGGCTTCCCAAGGCATTGGTCCTAGCACCTACTAGGGAGTTAGCCAAGCAAGTTGAGAAGGAGATACAAGAATCTGCTCCTTACGTGAAAACGGTTTGTGTTTATGGGGGTGTTTCTTATGTAACGCAGCAGAGTGCGCTTTCGCGAGGTGTTGATGTGGTGGTTGGAACACCGGGTAGAATAATTGATCTATTGAATGGAGGTAGCCTTACTCTGAGTGAGGTGCAGTATTTGGTGCTTGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGACGTGGAGGTAATTTTGGATAAGGTCCCTGCGCAGCGCCAGACCATGCTGTTTTCTGCTACCATGCCTGGTTGGGTCAAGAAACTGTCCAGAAAGCATTTGAACAATCCTTTGACAATTGATTTGGTTGGCGAACAAGAAGAGAAACTTGCTGAAGGGATCAAACTTTATGCTTTATCTGCCACTGTCACTTCAAAACGGACAGTTCTGTCTGATCTTATAACTGTTTATGCAAAGGGTGGAAAGACTATTGTTTTTACGCAGACAAAAAAGGATGCTGACGAAGTATCGTTGGCATTAACGAGTAGTATAGCCTCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTTCGGCAAGGGAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCGAATGTTGATTTGGTTATACATTATGAACTTCCCAATGATGCTGAGACTTTTGTACATCGTTCTGGTCGCACTGGGCGAGCAGGAAAAGAGGGTACTGCCATATTGATGTACACCAGTAGCCAGAAGAGAACAGTTAGATCCCTTGAGCATGATGTTGGCTGCAAATTTGAATTCATTAGTCCACCGGCTATGGAAGAAATTTTGGAGTCATCTGCTGAACAAGTTGTTGCTACACTTAATAGAGTTCATCCAGAGTCTGTGAAGTTTTTCACTGCAACTGCGCAAAAACTGGTTGAAGAACAAGGAGCAAGTGCCCTTGCAGCTGCTCTAGCACAGTTGAGTGGATTCTCTCGACCTCCATCATGTCGGTCTCTTATCAATCATGAACAGGGATGGATTACACTTCAACTTACTCGAGATTCAGACACTTCTGGAAGATTTTTTTCTGCAAGATCTGTCACTGGGTTTCTTTCTGATGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACATTTAATTGCAGATGAGAGGATTAAAGGAGCTGTCTTTGATCTCCCGGAGGAAGTTGCTAGAGAGTTGCTCAAAAAGGAACTGCCTTCTGGAAACACTATTTCCAAAATCACCAAATTACCTCCTTTGCAAGACGATGAACCTGCAAGTGATTTCTATGGGAAGTTTTCTGACAGAGACAGAAGTAATCGAAGGGGTTCTAATTCTAGGAATCAAAGAGGCTTTAGAAGTTCGCGAGGATGGGAAGGAGGCCAAGACTCTGATGATGAGTTCGGAGGAGGCAGTAGAAATTTCAGATCAGGCAACAATAGGTCTCGAATGGGAAAAAACAGCGCCGATGACTGGCTAATTGGAGGTGGACGATCCAACAGATTTTCATCATCCAACAGAAGCGGGCATGGAGGGGCCTGTTTCAATTGTGGACAACCTGGCCATCGAGCTTCAGATTGTCGCAAAAAACGAGACTTTTTCTAG 2199 0.4497 MASSSTIPISSPISIFKNPSLQLLRRPTNSVSFNTLPRNPTLSSVTSAITTPISSVLTQQSFEGLTLDDVSNGLQFGYDHQPDHVSDHELDISKLSLPSSLVHALQKRGITSLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPILRGLTHDDEQSSHRRHSRLPKALVLAPTRELAKQVEKEIQESAPYVKTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLLNGGSLTLSEVQYLVLDEADQMLAVGFEEDVEVILDKVPAQRQTMLFSATMPGWVKKLSRKHLNNPLTIDLVGEQEEKLAEGIKLYALSATVTSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSLALTSSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGKEGTAILMYTSSQKRTVRSLEHDVGCKFEFISPPAMEEILESSAEQVVATLNRVHPESVKFFTATAQKLVEEQGASALAAALAQLSGFSRPPSCRSLINHEQGWITLQLTRDSDTSGRFFSARSVTGFLSDVYSPAADEVGKIHLIADERIKGAVFDLPEEVARELLKKELPSGNTISKITKLPPLQDDEPASDFYGKFSDRDRSNRRGSNSRNQRGFRSSRGWEGGQDSDDEFGGGSRNFRSGNNRSRMGKNSADDWLIGGGRSNRFSSSNRSGHGGACFNCGQPGHRASDCRKKRDFF* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1435 732 Gene3D - 703 730 - -
Vra8g1435 732 MobiDBLite consensus disorder prediction 696 710 - -
Vra8g1435 732 MobiDBLite consensus disorder prediction 609 722 - -
Vra8g1435 732 Pfam Helicase conserved C-terminal domain 326 432 IPR001650 -
Vra8g1435 732 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 121 298 IPR014001 -
Vra8g1435 732 PANTHER - 77 723 - -
Vra8g1435 732 SMART helicmild6 352 432 IPR001650 -
Vra8g1435 732 SMART ultradead3 109 315 IPR014001 -
Vra8g1435 732 SMART c2hcfinal6 711 727 IPR001878 GO:0003676|GO:0008270
Vra8g1435 732 Pfam Zinc knuckle 711 727 IPR001878 GO:0003676|GO:0008270
Vra8g1435 732 CDD DEADc 101 299 - -
Vra8g1435 732 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 77 723 - -
Vra8g1435 732 CDD GUCT_Hera 527 606 - -
Vra8g1435 732 Pfam DEAD/DEAH box helicase 114 287 IPR011545 GO:0003676|GO:0005524
Vra8g1435 732 Gene3D - 316 517 IPR027417 -
Vra8g1435 732 CDD SF2_C_DEAD 324 441 - -
Vra8g1435 732 MobiDBLite consensus disorder prediction 626 642 - -
Vra8g1435 732 ProSiteProfiles Zinc finger CCHC-type profile. 712 727 IPR001878 GO:0003676|GO:0008270
Vra8g1435 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 451 IPR027417 -
Vra8g1435 732 SUPERFAMILY Retrovirus zinc finger-like domains 692 730 IPR036875 GO:0003676|GO:0008270
Vra8g1435 732 Pfam GUCT (NUC152) domain 519 619 IPR012562 GO:0003723|GO:0004386|GO:0005524
Vra8g1435 732 Gene3D - 91 302 IPR027417 -
Vra8g1435 732 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 327 472 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1435 Vra-Chr8 31328876 31336381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1435 83 454 Eukaryotic Initiation Factors Gene Family AT1G72730 35.638 6.65e-62 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1435 - - gmx:100815040 1197.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0844 3 8580844 8586726 Vra8g1435 8 31328876 31336381 PCT