Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1427 ATGGAAAAGAAAGCGACAATGGTCTCTGCTGTTTCTCTCATTCTCGTAGTAGGCGTTGCCCTAGGCGTTGTCGCTTTTGTCTCAACCGGCAACGACGACGAACCCGCCACCTCAGGCGACACCACCGGAAAGTTGACCACCCACACCAAAGCTGTGCAAGCCGTGTGCGCAAACACTGACGATAAGAAGTTCTGCTCTGACACTTTCAGCTCCGTCAACACCTCAGACCCAACCGCATACGTAAAAACCGTGGTCACAAAAGCCATGGACGACGTCATCAAAGGCTTCAACCTAAGCGACACTCTCAAGATCGAAAACAGCAAGGGAAACTCAACCGTCAAGATGGCCCTCGATGATTGCAAGGACCTGTTGGAATTCGCCATCGACGAACTACAAGCGTCCCAGATTTTAGTCAAAGAGAACAACATTAACAACATCAACGACCGCGCTGCTGACCTCAAAAACTGGATTGGCGCCGTCGTTGCATACAAGGAATCGTGCCTGGACGGCTTCGACACGGACGGGGAGAAGGAGGTGAAATCCAAGTTGAAAACCGAAAGTTTGGATAGAATTGGGAAGTTAACGGGGTTAGCTCTTGACGTTGTGTCCGGCTTCGCTGAAGTACTCTCGGACTTCAATTTGGATCTGACTGCCAAGACTTCGTCTCGTCGTCTTCTCGATGTGGACCAAGAGGGATATCCATCGTGGTTGTCCATGCCGGATCGGAAGCTCTTGGCGGACGCAGCTTCCGTTAAACCTAATGCGGTTGTTGCCAAGGATGGTAGTGGCGATTATAAGACCGTTGAGGAGGCTATTAACTCCTACCCGAAAAATCATCAAGGCAGATACATTATCTACGTCAAGGCTGGTACCTATGATGAATACATCAAAGTTGACAAAAAGAAGAGTAGAATTCTGCTATATGGCGATGGCCCCACAAAGACAATTATCACCGGCAATAAAAACGTCGTTGATGGTTATAAGACAATTAGAACCGCCACCTTCTCGACGGTTGCAGAAGATTTCATGGCAAAGTCTATTGCATTTGTGAACTCCGCCGGCGCGGCGAAACACCAAGCAGTCGCATTGCGCGTTCAAGGCGATAGGTCGGCCTTCTTCGACTGCGCCATGCACGGTTACCAGGACACGTTGTACACCCATGCTCATCGTCAGTTCTACCGCAACTGCGAAATATCTGGCACGGTGGATTTCATTTTCGGGTACGGCACCACCCTGATCCAGAACTCGAAGATCATTGTGCGGAAACCAGATCCGAATCAGCAGAACATTGTGGTGGCGGACGGGACAGACCAAAAGAACATGCCGACAGGAGCGGTGCTGCAAAACTGCGATATCATGGCGGAGCCGGAACTGGAGAAGGTAAAGACGTCGTTTAAGACGTACTTGGCTCGGCCGTGGAAGGCATATTCGAGGGCAATCTTCCTAGAAAACACGATCAGTGATGTGATTCAGCCAGATGGGTATCTTCCCTGGAATGGGAACCTGAACCTGGACACGTGTTTCTTTGCTGAGTATGAGAACACTGGGGCCGGTGCCGATCTGAAAGCTAGGGTGAAGTGGAGTCGCGGGGTCCTTAGCAAGGCTGATGCTAACAAATACACTGCTGACCAATGGCTCCAGGCCAACGCCTGGCTCCCTGCCACTGGCATTCCTTTCACTCCTGGCCTCACCAAACCTTGA 1701 0.5085 MEKKATMVSAVSLILVVGVALGVVAFVSTGNDDEPATSGDTTGKLTTHTKAVQAVCANTDDKKFCSDTFSSVNTSDPTAYVKTVVTKAMDDVIKGFNLSDTLKIENSKGNSTVKMALDDCKDLLEFAIDELQASQILVKENNINNINDRAADLKNWIGAVVAYKESCLDGFDTDGEKEVKSKLKTESLDRIGKLTGLALDVVSGFAEVLSDFNLDLTAKTSSRRLLDVDQEGYPSWLSMPDRKLLADAASVKPNAVVAKDGSGDYKTVEEAINSYPKNHQGRYIIYVKAGTYDEYIKVDKKKSRILLYGDGPTKTIITGNKNVVDGYKTIRTATFSTVAEDFMAKSIAFVNSAGAAKHQAVALRVQGDRSAFFDCAMHGYQDTLYTHAHRQFYRNCEISGTVDFIFGYGTTLIQNSKIIVRKPDPNQQNIVVADGTDQKNMPTGAVLQNCDIMAEPELEKVKTSFKTYLARPWKAYSRAIFLENTISDVIQPDGYLPWNGNLNLDTCFFAEYENTGAGADLKARVKWSRGVLSKADANKYTADQWLQANAWLPATGIPFTPGLTKP* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1427 566 SUPERFAMILY Pectin lyase-like 251 562 IPR011050 -
Vra8g1427 566 CDD PMEI-like_3 54 206 - -
Vra8g1427 566 Gene3D - 248 563 IPR012334 -
Vra8g1427 566 PANTHER PECTINESTERASE 3 562 - -
Vra8g1427 566 Pfam Pectinesterase 254 548 IPR000070 GO:0030599|GO:0042545
Vra8g1427 566 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Vra8g1427 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 200 IPR035513 -
Vra8g1427 566 SMART PMEI_2 47 201 IPR006501 GO:0004857
Vra8g1427 566 Pfam Plant invertase/pectin methylesterase inhibitor 51 199 IPR006501 GO:0004857
Vra8g1427 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 205 IPR035513 -
Vra8g1427 566 TIGRFAM PME_inhib: pectinesterase inhibitor domain 45 187 IPR006501 GO:0004857
Vra8g1427 566 PANTHER PECTINESTERASE 3 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1427 Vra-Chr8 31204960 31207103 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1427 2 563 Carbohydrate Esterase AT3G05610 41.986 2.07e-150 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1427 K01051 - gmx:100820142 886.33