Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1426 ATGGGAAGACACTCTTGTTGCTACAAACAGAAGTTACGGAAAGGCCTTTGGTCTCCAGAGGAAGATGAGAAGCTTCTGGATTACATCACCAAACATGGTCATGGATGTTGGAGTTCAGTCCCCAAACTTGCTGGTCTGCAGAGGTGTGGGAAGAGTTGTAGGTTGAGGTGGATAAATTACCTTAGGCCTGATTTGAAGAGAGGAGCATTCTCACAGGAGGAGGAGAACATGATCATTGAACTCCATGCAGTCCTTGGAAACAGGTGGTCTCAGATTGCAGCACAGTTACCGGGAAGAACTGACAATGAGATTAAAAACTTATGGAACTCGTGCCTGAAGAAGAAGCTGAGGCAAAGAAGCATTGACCCAAACACCCACAAACCACTCTCTGAGGTTGAGAAGGACAAGGACATGCCACCCTCAACCGACAAAACCAATCAGAAAGCCTCATTGGGATCCAATGAAGTGCCAGCAAAACCCTTGCCTTCTTCAGAGAGATACCCTCTTGAAGTTTCCACCAGTTCAACCCAGGAACTATTCCTAGATAGGTTTGGTGCTACCTGCCATGACAACACTTGCAGACCCTCTGATGTGGTAGGACCATATTTCTCCTTCAACCACTTCAACTATGGGACAACAACCATCGGCCTCTCTGCAAACCCCAACGCATCTCTTTCTTTCATTCCACCCTCCACCTCTTCAGACCTCAACAATTCCACCATAACCTCCTCTATGCTGCATTCCATTTTCCCAACACATGTCAAGCTCCAATCTAACGACAACCCTTCCATATCCTCTGATGCGGTTCAAAACTGGGAATCCAACAACACAAACAAAACCAATGCCAGTATGCAGTTTCAAAGCAGCACAAACTTCCTTGAAAACACGTGGGGGGTGGCTGATTCTGCAAAGGTTAACATTAACAAAGATTCTCAAGTGCCCCTTCAGACAGAACAAGAGGATCTAAAATGGTCTGAGTATCTTAACACCCCATTTATTCTGGGAAACACACCGGAGAATCAAATCCAAACCTCTCAATCTATCTACAGTGAGGTCAAACCAGAAACAGGATTCATAACAGACGAGTCATGTACTAGTTGGCACCACCCGCCACCAGCTTTTCAACTTTCCGATATATATAGCAAGAATCTGCAGAGATTTTCAGTGACTTTTGGACAAACCCTTTAA 1188 0.4529 MGRHSCCYKQKLRKGLWSPEEDEKLLDYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQEEENMIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRSIDPNTHKPLSEVEKDKDMPPSTDKTNQKASLGSNEVPAKPLPSSERYPLEVSTSSTQELFLDRFGATCHDNTCRPSDVVGPYFSFNHFNYGTTTIGLSANPNASLSFIPPSTSSDLNNSTITSSMLHSIFPTHVKLQSNDNPSISSDAVQNWESNNTNKTNASMQFQSSTNFLENTWGVADSAKVNINKDSQVPLQTEQEDLKWSEYLNTPFILGNTPENQIQTSQSIYSEVKPETGFITDESCTSWHHPPPAFQLSDIYSKNLQRFSVTFGQTL* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1426 395 Gene3D - 11 67 - -
Vra8g1426 395 MobiDBLite consensus disorder prediction 122 169 - -
Vra8g1426 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vra8g1426 395 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra8g1426 395 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra8g1426 395 CDD SANT 17 61 IPR001005 -
Vra8g1426 395 MobiDBLite consensus disorder prediction 122 142 - -
Vra8g1426 395 PANTHER HOMEODOMAIN-RELATED 1 388 - -
Vra8g1426 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vra8g1426 395 SMART sant 66 114 IPR001005 -
Vra8g1426 395 SMART sant 13 63 IPR001005 -
Vra8g1426 395 Gene3D - 68 141 - -
Vra8g1426 395 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vra8g1426 395 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vra8g1426 395 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra8g1426 395 PANTHER MYB DOMAIN PROTEIN 55 1 388 - -
Vra8g1426 395 CDD SANT 69 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1426 Vra-Chr8 31195234 31197182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1426 1 395 MYB Transcription Factor Family AT1G09540 50.000 2.62e-111 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra8g1426 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1426 K09422 - gmx:778072 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0853 3 8663124 8665482 Vra8g1426 8 31195234 31197182 PCT