Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1423 ATGCCTTTGTACGAGTTATACCGTCTGGCCAGAGAAAAGCTTGGTACAGAGAATAACAGCACACGTGCATCTGATCAATGTTCCTCACCTGAGAATGATTTTTTTGAGCTAGTTTGGGAGAATGGTCAGATTTCTAGCCAGGGTCAGTCTAGTAAAGTTAGAAGGAGCCCATCTTGCAGGAGTTTGCCATCTCACTGCCTACCATCTCACAGTCCCAAGGGTAGAGACAAAGATGTAGGATATGGTGCCAACAGGATGGGAAAATTTAGAGATTTAGACTCTGGATTGAATGAAATTTCAATGTCGGTGCCGTCCCGTGAAGTTGATTTCTGTCAAGACGAAGATGTGTTACCTTGGTTTGATTACCCAACAATGGATGATTCCTTGCAACATGACTATGGTTCTGATTTCCTCCCTGCCCCAACTAGCTTTACTCTATCGGATAAAAAAAGTAATAGCAGTATGGCTTTGAGGGATTCTCATAAAACTTCTGAAGAACAAGGAAATGCTTTCGACGATTCTTCAGCTGAGCAGGTTGGAAATGTCGAACCCAAAGCTATCACCAATCAGTTATACCCTCCATCATTGCATCATTGTCAAACATCTTTTGTATCTTCAAGATCCAGAACATCAGATATAACTGAAAATAACAGTACTAGTAATGCAAACCAGGATGCCACTTATGGCGAAATTACCAATTTTCTATCTTCCTCAAGTGATTTTTCTAGCCCAAAAGGGAAGAAGCAAGAGCCACCTCTGCCTGGCAATGGTTCCAGTTCCACCATAATGAATTTCTCCCATTTCGCTAGGCCTGCCGCAAAGGTAAGAGCTAATCTTCAGAACATTGGCTTGAAGTCTGGTTTGTCTTCAGCAAGATCAGACAGTATGGAAATTAAGAATAAAGATGCAGCTGCAACTAGCAGCAATCCTCCTGAATCAGTTGTTGTTGATTCAGGTGGTGAATGTCCGAAGGAACTGACTATACACTGTCAGCAGAATGTGGATCAATCCAAGACTAATTTGAACACTTCACTGTCGAAAGCTGTTGAACAGAGTGCAGTGCTTTCTAAACAGTCGGAGACTGCTTTTAATGAGAGTTCCACTAAGATTGACAAAATTGCAGATCGAGTTCTTGGTGACAGTGGTGTGAAAGGGCAGACAACTGCTGAAAAAAGTATGGAGGCAGCAGTAGCCTCTTCCTCTGTTTGCTCTGGCAATGGTGCTGACAGAGGTTCAGATGAGCCAAATAAAAATGTGAAGCGAAAAAGAAAGGACACCGATGACTCTGAGTGCCACAGTGAAAGGACATTTTACATGAAGGATGCTGAAGAAGAATCAGCGGGTGTTAAAAAGGCAGCTGGAGGGCGTGGAGGTACAGGTTCCAAGAGAACCCGTGCAGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGGGACAGAATCAACGAGAAGATGCGTGCGTTGCAAGAACTCATTCCAAATTGCAATAAGGTGGATAAAGCCTCAATGCTAGACGAGGCAATCGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTATATATGCCTCCAATGATGTTACCTGCAGGAATGCAGCACATGCATGCACCACATATGACTCCATTTTCACCTCTGGGTGTTGGCATGCATATGGGATATGGTATGGGTTATGGGGTGGGAATGCCCGATATGAATGGTGGATCTTCAAGATTCCCTATGATTCAGGTGCCCCAGATGCAAGGAAGTCATATCCCTGTCGCCCAAATGTCTGGACCTACTGCTTTACATGGAATGACCGGATCAAATCTTCCAAGGCTCGGGCTTCCTGGACAAGGTCATCCCATGCCAATGCCGCGAGCTCCCGTGCTGCCGTTTTCTGGAGGACCTGTCATGAACTCATCAGCTCTGGGACTAAATGCCTGTGGATTGTCAGGACTTGTTGAAACCGTGGATTCAGCTTCTGCATCTGGCTTAAAGGATCAAATGCCAAATGTTGGCCCACTAGTTAAGCAAAGCATTGGTGGCGGTGACTCAACAAGTCAGATGCCAACACAGAGTGAAACAGCTGTTGCTGGATTTGAGCAATCTGCTATGGTTCATAACAGCGGTCATACCTCTGGGGCTAATGACAATGGAGCTCTTAATCCTTGTTCCAGCAGATAA 2184 0.446 MPLYELYRLAREKLGTENNSTRASDQCSSPENDFFELVWENGQISSQGQSSKVRRSPSCRSLPSHCLPSHSPKGRDKDVGYGANRMGKFRDLDSGLNEISMSVPSREVDFCQDEDVLPWFDYPTMDDSLQHDYGSDFLPAPTSFTLSDKKSNSSMALRDSHKTSEEQGNAFDDSSAEQVGNVEPKAITNQLYPPSLHHCQTSFVSSRSRTSDITENNSTSNANQDATYGEITNFLSSSSDFSSPKGKKQEPPLPGNGSSSTIMNFSHFARPAAKVRANLQNIGLKSGLSSARSDSMEIKNKDAAATSSNPPESVVVDSGGECPKELTIHCQQNVDQSKTNLNTSLSKAVEQSAVLSKQSETAFNESSTKIDKIADRVLGDSGVKGQTTAEKSMEAAVASSSVCSGNGADRGSDEPNKNVKRKRKDTDDSECHSERTFYMKDAEEESAGVKKAAGGRGGTGSKRTRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPPMMLPAGMQHMHAPHMTPFSPLGVGMHMGYGMGYGVGMPDMNGGSSRFPMIQVPQMQGSHIPVAQMSGPTALHGMTGSNLPRLGLPGQGHPMPMPRAPVLPFSGGPVMNSSALGLNACGLSGLVETVDSASASGLKDQMPNVGPLVKQSIGGGDSTSQMPTQSETAVAGFEQSAMVHNSGHTSGANDNGALNPCSSR* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1423 727 MobiDBLite consensus disorder prediction 702 727 - -
Vra8g1423 727 MobiDBLite consensus disorder prediction 203 245 - -
Vra8g1423 727 MobiDBLite consensus disorder prediction 288 318 - -
Vra8g1423 727 MobiDBLite consensus disorder prediction 705 727 - -
Vra8g1423 727 PANTHER TRANSCRIPTION FACTOR PIF3 1 690 IPR044273 GO:0003700|GO:0006355
Vra8g1423 727 MobiDBLite consensus disorder prediction 45 81 - -
Vra8g1423 727 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 465 514 IPR011598 GO:0046983
Vra8g1423 727 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 462 525 IPR036638 GO:0046983
Vra8g1423 727 Gene3D - 460 523 IPR036638 GO:0046983
Vra8g1423 727 PANTHER TRANSCRIPTION FACTOR PIF3 1 690 - -
Vra8g1423 727 MobiDBLite consensus disorder prediction 45 65 - -
Vra8g1423 727 CDD bHLH_AtPIF_like 465 527 - -
Vra8g1423 727 MobiDBLite consensus disorder prediction 413 450 - -
Vra8g1423 727 SMART finulus 471 520 IPR011598 GO:0046983
Vra8g1423 727 MobiDBLite consensus disorder prediction 144 179 - -
Vra8g1423 727 MobiDBLite consensus disorder prediction 384 472 - -
Vra8g1423 727 MobiDBLite consensus disorder prediction 154 168 - -
Vra8g1423 727 MobiDBLite consensus disorder prediction 288 314 - -
Vra8g1423 727 MobiDBLite consensus disorder prediction 385 407 - -
Vra8g1423 727 Pfam Helix-loop-helix DNA-binding domain 469 515 IPR011598 GO:0046983
Vra8g1423 727 MobiDBLite consensus disorder prediction 203 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1423 Vra-Chr8 31154524 31159496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1423 1 594 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 36.047 6.64e-71 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra8g1423 HLH 8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1423 K12126 - gmx:100794974 1114.75