Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1419 ATGTTGCTGTTTCTGCGAAAGCACAAGGGCATGACAAGGCAGAAAGTGAAACTTGCGTATATCAGTGATGTGACGGCAAGGAAATCGACGTACAAGAAAAGGAAGAAGGGTATCATTAAGAAGGTGAGGGAACTGACGATTCTGTGTGGGATCCCAGCCTGTGCAATAATTTCAAGTCCTTTTGAAGCTAAGGCAGAGATTTGGCCAGATCCTGAGGGAGCAAAGGAAGTGATTCAAAGGTATATGGATGCATCTGTTATTGATGAAAGCAAGAATGTGAACCAAGAGAGTTTCCTGATTCAGAGGATTTCCAAAGCCCAAGAACAGTTGAAGAAATTGCGTCAGGAGAATCAAGAGAAGGAGAAGATCTTGTCGATTTTCAGCTACATGCAAGGTCAAGATCTCCCAACTGATGTTCAAGAATTGAAACAACTCAAAAAGCTCATTGATAACACTCTCAAGGAAACTAAAATCAATTCTCAGTCTATGTAG 492 0.4146 MLLFLRKHKGMTRQKVKLAYISDVTARKSTYKKRKKGIIKKVRELTILCGIPACAIISSPFEAKAEIWPDPEGAKEVIQRYMDASVIDESKNVNQESFLIQRISKAQEQLKKLRQENQEKEKILSIFSYMQGQDLPTDVQELKQLKKLIDNTLKETKINSQSM* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1419 163 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 12 156 - -
Vra8g1419 163 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 60 IPR002100 GO:0003677|GO:0046983
Vra8g1419 163 Coils Coil 96 123 - -
Vra8g1419 163 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Vra8g1419 163 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Vra8g1419 163 ProSiteProfiles MADS-box domain profile. 11 59 IPR002100 GO:0003677|GO:0046983
Vra8g1419 163 PANTHER MADS BOX PROTEIN 12 156 - -
Vra8g1419 163 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Vra8g1419 163 SUPERFAMILY SRF-like 11 92 IPR036879 GO:0003677|GO:0046983
Vra8g1419 163 Gene3D - 23 126 IPR036879 GO:0003677|GO:0046983
Vra8g1419 163 Coils Coil 139 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1419 Vra-Chr8 31119006 31119911 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1419 11 155 MADS-box Gene Family AT5G26630 47.973 2.95e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vra8g1419 SRF-TF 7.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1419 - - var:108325536 268.47