Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1412 ATGGGCGGAGGTGGAGCGGCTACGGCGGTTGCGGAGGCACAGTACTCGTTGGTCAAGACTTCGGTTTGGTGGGATATAGAGAACTGTCAAGTGCCCAAAGGGTGCGATCCCCACGCCATCGCGCAGAATATAAGCTCCGCTCTCATTCGAATGAATTATTGCGGCCCCGTTTCTATCTCTGCTTACGGCGACACCACTGGCATCACTGCCTCCGTTCAGCATGCCCTCTCCAGCACCGGCATCTCCCTCAACCATGTCCCCGCCGGTGTTAAAGATGCAAGTGACAAAAAGATTCTTGTTGACATGCTATTCTGGGCTGTGGACAATCCTGCACCTGCTAATTACTTATTAATATCTGGTGATAGAGACTTTTCCAATGCTCTTCATCAGCTGCGGTTGAGGAGGTATAATATTCTTCTTGCACAGCCTAAGAAAGCTTCTGCACCCCTAGTAGCAGCTGCCAAGAGTGTGTGGCTTTGGACCAGTCTCTTGGCCGGAGGACCTCCCCTTACTAATGGTGAATCACTACAACTTGGTAATAATGACATCCAATCCTCTTCTGACTCCGTACAAAGTCCAGTCCATAATGCCTTTCAGATACCGCAGTATCTGGAATCCTATTCAGAAGTTCATACAGGAAATCAGAAATTCCCAGGTAAAGGAAGGCAACTTGATTCTAGACATCATGGGAAGACAAATGGGAGAAAGTCAAATAAATCAAATGGACCCAAGGTCAAGAAGCCTCCAGTTGGACTTCAAGAAAATGATGGCAATATAAATTCTCCTCCTCCTGGCAATTATACCCATAATGTTCCCCCAAGTGGTTCTACACCAAATTTTACTCTTGGCAATCCCGATCAAATGCGGGTTAATAATGGTAATCTACAAGACAATCATCAAAATCCACATTCACAACCATTAAGATCAAATCTTTTTCCTTTGGAGCCTCCTTTTTCACCGCCTTGGACTGGTGGGCTCAGCCTCTCTGCAGCACCACTTACGAAGGTACCAGATACTGGTGATATTTCTGGATATCTTAGTAATGCTCACGATCTGCACCCTGTTAATCAATTGAACGGGAACTTGGAACGGAGTTCTTACAGTAATTCTCCAAATCCTGTTAAATCTATTGATGAAGCAGATGGGCACATGATACAGAACGCAGGAAATTTGTATAATGGCTATGCACATAGTCCAGAACACCTTTCTTCATCATCAACAACCGCGTGTAATAATAATCTTCCTGGTAATGGTATGTGGGGATCTCCAGAATCTCCTAAATCTTCTGAATACGTCCAAGATCTTATAGGGGTTGTTTTACTTGCCTTGAACACACTGAAAACTGAAAAAATTAAGCCAACTGAGTCAAATATAACAGATTGTATTCGATTTGGAGATCCCAAGCATCGCAATACAGATGTCAAGAAGGCTCTGGAGATTGCTGTTGAGCAGCAGATGGTAGCGAAGCAGAATGTAGGTGCTTTGGAATTGTTTGTTGGTAAGAATGATCAAGTTTGGAAGTGTGTATGCACTCTGGGTGGTAATCCTAAGAAGCACTCAAAAGAGACATGGAACAAAATAAAAAAATTTCTAGGTACTTCTCCTGGAAGATTGGCAATAATGAATACCCAGTGCAAGTACGAAGCAGGTATTGTGATTAAGAATATGTGCTTGAAAGATCATGCTTTGGGTGATGTCCTACAGATTTTGAGTTTAGCGATTTCCTATAAAAAATGGATTGTGCATCAACAATTGGGCTGGCAACCAGTTAACATCACCCTTGCTGAGAAATGTGATTCAGAGGTCATAGCATGCAAATAA 1821 0.4344 MGGGGAATAVAEAQYSLVKTSVWWDIENCQVPKGCDPHAIAQNISSALIRMNYCGPVSISAYGDTTGITASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRLRRYNILLAQPKKASAPLVAAAKSVWLWTSLLAGGPPLTNGESLQLGNNDIQSSSDSVQSPVHNAFQIPQYLESYSEVHTGNQKFPGKGRQLDSRHHGKTNGRKSNKSNGPKVKKPPVGLQENDGNINSPPPGNYTHNVPPSGSTPNFTLGNPDQMRVNNGNLQDNHQNPHSQPLRSNLFPLEPPFSPPWTGGLSLSAAPLTKVPDTGDISGYLSNAHDLHPVNQLNGNLERSSYSNSPNPVKSIDEADGHMIQNAGNLYNGYAHSPEHLSSSSTTACNNNLPGNGMWGSPESPKSSEYVQDLIGVVLLALNTLKTEKIKPTESNITDCIRFGDPKHRNTDVKKALEIAVEQQMVAKQNVGALELFVGKNDQVWKCVCTLGGNPKKHSKETWNKIKKFLGTSPGRLAIMNTQCKYEAGIVIKNMCLKDHALGDVLQILSLAISYKKWIVHQQLGWQPVNITLAEKCDSEVIACK* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1412 606 Gene3D - 15 162 - -
Vra8g1412 606 MobiDBLite consensus disorder prediction 212 316 - -
Vra8g1412 606 PANTHER LIMKAIN B LKAP 2 591 IPR024768 GO:0005777|GO:0010468|GO:1903231
Vra8g1412 606 MobiDBLite consensus disorder prediction 356 375 - -
Vra8g1412 606 Pfam OST-HTH Associated domain 542 600 IPR025677 -
Vra8g1412 606 Pfam NYN domain 19 155 IPR021139 GO:0004540
Vra8g1412 606 CDD PIN_limkain_b1_N_like 19 143 - -
Vra8g1412 606 MobiDBLite consensus disorder prediction 356 378 - -
Vra8g1412 606 MobiDBLite consensus disorder prediction 254 308 - -
Vra8g1412 606 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 2 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1412 Vra-Chr8 31005645 31010929 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1412 9 181 C2H2 Transcription Factor Family AT5G61190 75.145 6.09e-83 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1412 - - vun:114190919 1034.25