Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1408 ATGGGTGCTGATCTTAAAGAAGAATTGTCCGTGAAAACTCCTGTTTTTGATCTTAAGGTTTGGGAACTGATTGGAATTGCGGTTGGACTGTTTATCATTGTCATCCTCTGTGTGCTCTCATTCTGCCTTACTTCAAGGAAGAAGTCTAGAAAAGCTAGGGATAGGGTTCCTGTTAGTCATATACCTGCTGTCTCAAAGGAAATCACAGAAGTGAGAGTTGAGCAAGTGCCGGCGAATGGATTTGTTCCACGTGAAGGAATACTTCTGACAATTCATGATAAATCCAGTGACAAAGAATCAGACAAAGTTATGCTCCATTTAGGTGTTGGGAAGAAGAAGCATGCAGATAGTGGTAGTCACTCGGATTCGTTTCATTACTTGGAGAAAGATGGTGGAGGGTCACAATCAGGGGAGGAGATTAGCTCTGGCTCGGTTGGAATGTACATGCCATCTTCTTCATACCCTATAACAGCTCCTTCACCTCTCTCTGGTCTTCCAGAATTCTCTCACTTGGGTTGGGGTCACTGGTTTACTCTGAGGGATCTCGAGCTTGCTACAAACCGTTTTTCAAAAGAAAATGTAATTGGTGAGGGTGGCTATGGAGTTGTTTACCGGGGACAGTTGATCAATGGGACTCCAGTGGCAGTTAAAAAGATACTCAATAACATTGGTCAAGCTGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGTCATGTCCGGCATAAAAATTTGGTTCGACTTTTGGGGTACTGCATGGAGGGGACTCACAGGATGTTAGTCTATGAATACGTCAGTAATGGAAACTTAGAGCAATGGCTTCACGGAGCTATGCGACATCATGGATATCTTACCTGGGAAGCACGTATAAAGATTCTCCTTGGCACAGCTAAGGGGCTTGCATATTTGCATGAAGCGATTGAGCCAAAGGTGGTGCACCGAGATATCAAGTCAAGCAACATATTAATTGATGATGACTTTAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAGTTACTGGGTTCTGGGAAGAGTCATGTTGCAACACGAGTTATGGGAACCTTTGGATATGTGGCCCCTGAATATGCAAATACTGGTCTTCTAAATGAAAAAAGTGATGTATATAGCTTTGGTGTTGTGCTATTGGAAGCAATTACTGGAAGAGATCCAATTGACTATGGTCGCCCAGCACAGGAAGTTAACATGGTTGATTGGCTGAAGATGATGGTTGGAAACAGACGATCAGAAGAAGTGGTGGACCCAAACATTGAGGTGAAGCCATCTACCAGGGCTTTGAAACGGGCGCTCTTAACTGCTTTGAGATGTGTAGATCCAGATTCAGAGAAAAGACCCAAGATGGGTCAAGTTGTGCGTATGCTTGAGTCAGAGGAGTACCCTTTAGCTAGAGAGGACCGTAGGCATCGAAGAAATCATGGGGTTAACTCAGAAATTGAATCCCATAAGGATAGTTCTGACACGGATGGGAGTGACATTCAAGGTTCTAGATCAGAAAGTGGAAGATTCTTGGATTTGCCTAACCGAGATGGCTATGGCAGAGGCTGA 1563 0.4389 MGADLKEELSVKTPVFDLKVWELIGIAVGLFIIVILCVLSFCLTSRKKSRKARDRVPVSHIPAVSKEITEVRVEQVPANGFVPREGILLTIHDKSSDKESDKVMLHLGVGKKKHADSGSHSDSFHYLEKDGGGSQSGEEISSGSVGMYMPSSSYPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKENVIGEGGYGVVYRGQLINGTPVAVKKILNNIGQAEKEFRVEVEAIGHVRHKNLVRLLGYCMEGTHRMLVYEYVSNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKGLAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGSGKSHVATRVMGTFGYVAPEYANTGLLNEKSDVYSFGVVLLEAITGRDPIDYGRPAQEVNMVDWLKMMVGNRRSEEVVDPNIEVKPSTRALKRALLTALRCVDPDSEKRPKMGQVVRMLESEEYPLAREDRRHRRNHGVNSEIESHKDSSDTDGSDIQGSRSESGRFLDLPNRDGYGRG* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1408 520 ProSiteProfiles Protein kinase domain profile. 189 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1408 520 MobiDBLite consensus disorder prediction 112 144 - -
Vra8g1408 520 CDD STKc_IRAK 195 461 - -
Vra8g1408 520 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 3 504 - -
Vra8g1408 520 SUPERFAMILY Protein kinase-like (PK-like) 173 469 IPR011009 -
Vra8g1408 520 MobiDBLite consensus disorder prediction 468 495 - -
Vra8g1408 520 PANTHER OS01G0323000 PROTEIN 3 504 - -
Vra8g1408 520 MobiDBLite consensus disorder prediction 468 520 - -
Vra8g1408 520 MobiDBLite consensus disorder prediction 112 127 - -
Vra8g1408 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
Vra8g1408 520 Gene3D Transferase(Phosphotransferase) domain 1 265 477 - -
Vra8g1408 520 SMART serkin_6 189 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1408 520 Gene3D Phosphorylase Kinase; domain 1 171 264 - -
Vra8g1408 520 Pfam Protein kinase domain 190 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1408 520 ProSitePatterns Protein kinases ATP-binding region signature. 195 218 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1408 Vra-Chr8 30944004 30949244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1408 132 463 Trihelix Transcription Factor Family AT1G70460 47.633 2.66e-92 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vra8g1408 Pkinase 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1408 - - gmx:100778269 942.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1408 8 30944004 30949244 Vra3g0863 3 8750910 8755344 PCT