Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1405 ATGACTTCCGTTGGTGTGGCGCCAACTTCGGGTTTAAGAGAAGCCACTGGGCATGGAGCAGCAGGTGTTGATAGGTTGCCGGAGGAGATGAACGATATGAAAATTAGGGATGATAGAGAAATGGAAGCCACTGTTGTTGATGGCAATGGAACGGAGACCGGACATATCATTGTGACTACCATTGGTGGTAGAAATGGTCAGCCGAAGCAGACTATAAGCTACATGGCAGAACGTGTTGTAGGTCATGGATCGTTTGGTGTTGTCTTCCAGGCTAAGTGCTTGGAAACTGGTGAAACCGTGGCTATCAAAAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAGCTGCAAACAATGCGCCTTCTTGACCACCCAAATGTTGTCTCTTTGAAGCACTGTTTCTTTTCAACAACTGAAAAGGATGAACTCTACCTTAATTTGGTACTTGAGTATGTTCCTGAAACAGTTAATCGTGTGATCAAACATTACAACAAGTTGAACCAAAGGATGCCTCTGATATATGTGAAACTCTATACATACCAGATCTTTAGGGCATTATCTTATATTCATCGTTGCATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGGTCAATCCACACACACACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATATTACAGAGCACCTGAGCTTATATTTGGAGCAACTGAATATACTACAGCCATCGACATCTGGTCTGTTGGATGTGTCTTAGCTGAGCTGCTGCTTGGACAGCCTTTGTTCCCTGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATTATAAAGGTTCTCGGCACTCCAACAAGGGAAGAGATTAAATGCATGAACCCTAACTATACGGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGATCTTCCACAAGCGCATGCCTCCAGAGGCTGTTGATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTTTAGATGCTCTGACGCATCCTTTCTTTGATGAGCTTCGTGATCCAAACACTCGCTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTTAAATCTCACGAACTGAAAGGAGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAACATGCGAGGAAGCAATGCCCGTTTCTTGGCTTGTGA 1233 0.4355 MTSVGVAPTSGLREATGHGAAGVDRLPEEMNDMKIRDDREMEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVNRVIKHYNKLNQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALDALTHPFFDELRDPNTRLPNGRFLPPLFNFKSHELKGVPAEILVKLVPEHARKQCPFLGL* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1405 410 ProSiteProfiles Protein kinase domain profile. 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1405 410 Pfam Protein kinase domain 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1405 410 SUPERFAMILY Protein kinase-like (PK-like) 73 384 IPR011009 -
Vra8g1405 410 ProSitePatterns Protein kinases ATP-binding region signature. 80 104 IPR017441 GO:0005524
Vra8g1405 410 Gene3D Phosphorylase Kinase; domain 1 58 153 - -
Vra8g1405 410 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 408 - -
Vra8g1405 410 SMART serkin_6 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1405 410 PANTHER BNAC03G34380D PROTEIN 1 408 - -
Vra8g1405 410 Gene3D Transferase(Phosphotransferase) domain 1 154 402 - -
Vra8g1405 410 MobiDBLite consensus disorder prediction 1 28 - -
Vra8g1405 410 CDD STKc_GSK3 69 361 IPR039192 -
Vra8g1405 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1405 Vra-Chr8 30912055 30916246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1405 80 386 MAP Kinase Gene Family AT2G43790 34.796 5.36e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vra8g1405 Pkinase 4.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1405 K00924 - gmx:100780226 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1405 8 30912055 30916246 Vra8g1405 8 30912055 30916246 ECH