Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1401 ATGGGTGGTAGCGTTATTCCACTCTTGGCCATGATTGTTGTACAATTGAGTTATGCAGGAATGAATATTTCCTCAAAGCTTGCCATAGAATCTGGCATGCACCCTCTTGTCCTTGTTGCTTATCGTCAAATTTTTGCCACTTTCTCCTTAGCTCCTTTTGCTTATTGCTTTGAACGGAATACGGCTCCCCCAATGACGAAGCGAATTGCGTTGCAGATATTATTATCTTCCTTAACAGGAATTACAGGAAATCAGATGCTATATTTCCTGGGTCTTAAATATTCAACCGCTACAATTGCATGTGCACTAAGCAACTTGCTCCCAGCATTCACTTTCGTTCTTGCAGTTCTCTTCGGACAAGAGTGTTTGAGGATCAAGACCAAGGCTGGGGTAGCGAAGGTGTTTGGGACAATCCTTAGTGTGGGTGGAGCAGTGGTTCTATCATTTTACCATGGAAAACTCCTTGGTCTAGGTGAGTCAAAAATTCAATGGAAATATGCTGAGAAAATGGAGAGAAGAGCCTCTTCTCACGGTGAAACAAACTTGCTTCTGGGTCCTGTTGCTGTAATTTGTAGCGCTCTTGTTTGGGCAGTATGGTTCATAATTCAAGCAAATATAAGCAAGAGCTACCCAGTTCCTTTTACCAGCAGTTTCTACATGTGTTTGATGGCAAGCATTCAGTGTGTGGCCATTGCCTTGTCTGTTGAACACCAGGCATCAGCTTGGTCACTGCAGAGTACAATAAGACTTACCTCTGCACTTTATGCGGGAACTATTTCAACTGGGCTAACGTATTTTCTCCTCTCGTGGTCTATCGAGAAGAAAGGTCCTCTCTATGCGTCTGTGTTCTCCCCTTTGCAGCTTGTCATCATTGCTGTTGTTAGCTGGGCACTACTGCACGAAAAACTATACATTGGCACTGCCATAGGGTCTCTGGTGATAGTGTTTGGACTGTATTTTGTGTTGTTGGGAAAGAACAAAGATGTGGATGAGAATGACGGTGTTGATGAGATGACGGAGGAGGCAATGGAGGATGATGCGAAAGACCTGGAATTGCAACCCTATAATCCTTTCAACGGTAACGGAAAGCATCATGAAGAAGATGATAAAAGGAAAGAGAAGGTGACAGGCACAGATTAG 1140 0.4368 MGGSVIPLLAMIVVQLSYAGMNISSKLAIESGMHPLVLVAYRQIFATFSLAPFAYCFERNTAPPMTKRIALQILLSSLTGITGNQMLYFLGLKYSTATIACALSNLLPAFTFVLAVLFGQECLRIKTKAGVAKVFGTILSVGGAVVLSFYHGKLLGLGESKIQWKYAEKMERRASSHGETNLLLGPVAVICSALVWAVWFIIQANISKSYPVPFTSSFYMCLMASIQCVAIALSVEHQASAWSLQSTIRLTSALYAGTISTGLTYFLLSWSIEKKGPLYASVFSPLQLVIIAVVSWALLHEKLYIGTAIGSLVIVFGLYFVLLGKNKDVDENDGVDEMTEEAMEDDAKDLELQPYNPFNGNGKHHEEDDKRKEKVTGTD* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1401 379 PANTHER WAT1-RELATED PROTEIN 1 342 IPR030184 GO:0016021|GO:0022857
Vra8g1401 379 SUPERFAMILY Multidrug resistance efflux transporter EmrE 41 139 - -
Vra8g1401 379 MobiDBLite consensus disorder prediction 334 379 - -
Vra8g1401 379 SUPERFAMILY Multidrug resistance efflux transporter EmrE 223 326 - -
Vra8g1401 379 PANTHER WAT1-RELATED PROTEIN 1 342 - -
Vra8g1401 379 Pfam EamA-like transporter family 184 322 IPR000620 GO:0016020|GO:0016021
Vra8g1401 379 Pfam EamA-like transporter family 7 148 IPR000620 GO:0016020|GO:0016021
Vra8g1401 379 MobiDBLite consensus disorder prediction 361 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1401 Vra-Chr8 30881317 30883285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1401 5 362 Nodulin-like Gene Family AT1G09380 52.210 3.70e-133 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1401 - - var:108325504 680.248