Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1399 ATGGCCGGTAATGGGACCCATTCAGATTCAAAAGCTGCAACAATTGTCATTAAAGATCTCAAATTTACATACCCCGGCATCGACGGCCACCCGCCGCCCGGTTCCTTGCCGCTCATTCAAAACTTTTCTCTCACTCTCGGTTCCGGCGACCGCTCCCTTCTCGTCGGTTCCAACGGCGCCGGGAAAACCACGATCCTGAAGATACTAGGAGGGAAGCACTTGGTGGAACCTGACATGGTTCGCGTGCTTGGAAGATCAGCTTTTCACGACACCACTTTGGTGTCTTCTGGTGATCTCTGTTATCTCGGTGGCGAGTGGAGGCGAGATGTTGCTTTTGCGGGTTTTGATGTGCCAATACAGATGGACGTTTCTGCTGAAAAAATGATATTTGGTGTGGCTGGGATTGATCCTCAAAGAAGAGCGGAGCTCATCAAGGTATTGGACATTGATCTTTCCTGGAGATTGCATAAAGTATCTGATGGTCAAAGAAGAAGAGTACAGATTTGTATGGGTCTTCTCAAACCGTTCAAGGTTCTTCTTCTTGATGAGATAACTGTTGACCTTGATGTTCTAGCAAGAGCTGACCTTCTTAGATTTCTAAGAAAGGAATGTGAAGAGAGGGGTGCCACCATTATCTATGCAACACATATATTTGACGGTCTTGAGGATTGGCCTACACATATTGTGTATGTAGCCCATGGAAAGCTGCAACTAGCAATGCCTATGGAGAAAGTCAAAGAAATTAGCAAATTGTCACTAATGAGAACAGTAGAAAGTTGGCTGCGGAAGGAACGAGATGAAGATAGAAGGAAAAGAAAAGAAAGAAAAGCAGCTGGGCTTCCTGAATTTGGAAAGCAAATTGAGGGAAGCCGTGTAACAGGGGCAACTAATAATGGTTGGGCAGCAGGACGATTAAATTCCACCGTTGCTGGTGAGGAAAACTTCATCTTCAGCTCTAATCGAGTACTGAGGCAGTAG 978 0.4581 MAGNGTHSDSKAATIVIKDLKFTYPGIDGHPPPGSLPLIQNFSLTLGSGDRSLLVGSNGAGKTTILKILGGKHLVEPDMVRVLGRSAFHDTTLVSSGDLCYLGGEWRRDVAFAGFDVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEDWPTHIVYVAHGKLQLAMPMEKVKEISKLSLMRTVESWLRKERDEDRRKRKERKAAGLPEFGKQIEGSRVTGATNNGWAAGRLNSTVAGEENFIFSSNRVLRQ* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1399 325 PANTHER ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED 12 324 - -
Vra8g1399 325 SMART AAA_5 48 235 IPR003593 -
Vra8g1399 325 PANTHER ABC TRANSPORTER I FAMILY MEMBER 20 12 324 - -
Vra8g1399 325 Gene3D - 12 279 IPR027417 -
Vra8g1399 325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 250 IPR027417 -
Vra8g1399 325 Pfam ABC transporter 40 185 IPR003439 GO:0005524
Vra8g1399 325 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 15 258 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1399 Vra-Chr8 30873428 30876031 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1399 17 212 Calmodulin-binding Proteins AT2G36910 21.635 2.82e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1399 K12608 - gmx:100782386 572.392