Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1394 ATGAACACAATTGCCCTTATTCGCAACCGGGCCATGAAATCCATTCGCAGGATTCTCATCAGTTCTCGGAACTCATCGCCTTTTCTGTCTACACCTGCAAATTCAGGTCATGCTCCTCCTATTGCTGGCAATTCCCCGAGACCCCGTTTCAATCATCACCAGCCTTTGCAAATGCATCGCATAAAGGGTATTACGCAGAAAGTTTTAGGCTTGCCCTATTCGAATTTCGCCCCTTTAACAATGCCCTTTATTTTAATCACGTCCAACAGGGACGTATCTACCTTCAAGGTTCGAAATTGCTCAACCTCTGTGGAGAGCCGTGGCCATGACAACAATTTTGAGAGGATTTACGTACAGGGTGGCATGAATAACGTGAAGCCCTTGGTGGTGGAAAGTTCTCACGAGGATGTTACAGACGAGAGAAATTTAGGTGGTGAAGTGAATGCGAGTGTGGGGAAGAGTAAATGGGAGGAGTCAGACGTGGAAAAACAAGCATGGAAGTTGTTGCAGGGAGCCGTTGTGACTTATTGTGGCAACCCTGTGGGAACTGTGGCGGCAAATGATCCTGGTGACAAGCTACCCTTGAATTATGATCAGGTCTTTCTCAGGGATTTTATCCCATCAGCACTTGCTTTCTTGCTTAGAGGAGAAAGTGAGATTGTCAAGAACTTTCTTCTTCACACATTGCAGTTGCAGAGTTGGGAGAAAACAGTGGACTGCTACAGTCCAGGGCAGGGCCTGATGCCTGCAAGTTTCAAAGTTAGAACTGTAGCTCTGGACGAAGATAAACGTGAAGAAGTTTTAGATCCTGATTTCGGGGAATCAGCTATTGGTCGCGTTGCACCTGTAGATTCAGGATTGTGGTGGATCATCCTCTTGCGGGCTTACGGGAAGCTCACAGGAGATTGCAGCTTGCAAGAAAGGGCTGATGTTCAAACAGGCTTAAAAATGATCCTTAACTTGTGTTTAACAGATGGTTTCGATATGTTTCCTTCGCTCCTAGTCACTGATGGTTCTTGCATGATAGACAGGAGGATGGGGATTCATGGTCACCCCCTTGAGATCCAAGCATTATTTTACTCAGCTCTTCGCTGCTCACGTGAGATGCTTGTTGTAACTGAGGGAACTGATAATCTTATTAGAGCTATTAACAACCGGCTCAGCGCTTTGTCATTCCACATTAGAGAATACTATTGGGTGGACATGAAAAAGATGAATGAAATATACAGGTATAAAACAGAAGAGTACTCCATGGATGCCATCAATAAATTCAACATCTATCCAGAGCAAATTCCACCGTGGTTAATGGATTGGATTCCAGAAGAAGGTGGATATCTGATTGGGAATTTGCAGCCAGCTCACATGGACTTCAGGTTTTTCACACTTGGAAATCTTTGGTCCATCGTATCGTCATTGGGCACCCCAAGACAGAACCAGGCTACATTAAATCTGATAGAAGCAAAATGGGATGATCTTGTGGGCCATATGCCTCTTAAGATATGTTATCCTGCCTTGGATAATGAAGAGTGGCGCATAACTACTGGCTCTGACCCAAAGAATACCCCTTGGTCATATCACAATGGTGGATCTTGGCCAACCCTTCTGTGGCAGTTCACGCTGGCATGCATCAAAATGGGGAGGACTGAACTTGCCCAGAAAGCAGTTGCTTTGGCTGAGAAAAGACTGCCAGTTGATTCTTGGCCCGAATACTATGATACACGCACTGGAAAATTTATCGGAAAACAAGCCCGGATGTATCAAACATGGACCATAGCTGGTTTCCTTACATCCAAGATGCTTTTGAAAGATCCTGAGACGGCATCCAGGTTATTTTGGGAGGAGGATTATGAGCTTCTAGACATATGTGTTTGTGGACTTAGCAAGAATGGCAGGAAAAGATGTTCCCGTGGTGCTGCCAGGTCTCAGATTCTTCCTAAAACCGAAGGTGCCTCGGCCTCTGCTGCTTTTTTCAAACCCGGTACTGTGGTGGAAGTTAGCTCTGAGGATGAAGGCTTCCGTGGCTCCTGGTTTTCTGGCACCATCATCCGCCATCTTGCTTCTGACAGGTTTCTGGTAGAGTACCACAACCTGATGGCAGACGATAAAAGCTCAAAGAATTTAAGGGAAATCTTGCATATACGTCAACTGCGGCCCATTCTCCCACCGGAGACAGGCCAAATATTCAAATTTGGGGATGAGGTTGACGCATTCTACAATGACGGTTGGTGGGAGGGCTTTATAACTGAGGAATTAGAGAATGACAAATTTGCAGTGTATTTCAGGGCGTCCAAGGAGCAATTAGTGTTTTCCAAAGAACAACTCAGAATCCACCGAGAATGGTTCGATCACAAATGGGTCCCACCACTCCAGCAGAAAAATGATGAATCTAATGAAGCTGCAAAACCAGATGAATTTGTCCAAGGAGCTACAGTCGAGGTTAGCAGTGATGAAGATGGGTTCAGTGGAGCTTGGTTTGAAGCCACTATTGTTGAGATAAAGGGAAATGACAAGTTCGTTGTTGAGTACCAGACTCTGTTAGCCGATGATGATTCTAATCTTTTGAGAGAAGAGATTGATGTCTTTCACATAAGGCCTCCTCCGCCCAACAATAATGCTGACGGTCAATTCAAGCTTCTTGACGAAGTCGATGCCCTGTACAATGACGGTTGGTGGGTGGGTGTGATTTCAAAAGTTCTTGCTGACTCCAAGTATGTGATTTACTTCAGGTCTTCTAATGAGGAACTAGAGTTTCATCACTCTCATTTGAGGCTGCATCAGGACTGGATTCATGGAAAATGGGTTATGCCTTCTAAGGCGATGAAGTTGTGA 2829 0.4517 MNTIALIRNRAMKSIRRILISSRNSSPFLSTPANSGHAPPIAGNSPRPRFNHHQPLQMHRIKGITQKVLGLPYSNFAPLTMPFILITSNRDVSTFKVRNCSTSVESRGHDNNFERIYVQGGMNNVKPLVVESSHEDVTDERNLGGEVNASVGKSKWEESDVEKQAWKLLQGAVVTYCGNPVGTVAANDPGDKLPLNYDQVFLRDFIPSALAFLLRGESEIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTVALDEDKREEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKLTGDCSLQERADVQTGLKMILNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYSALRCSREMLVVTEGTDNLIRAINNRLSALSFHIREYYWVDMKKMNEIYRYKTEEYSMDAINKFNIYPEQIPPWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLGTPRQNQATLNLIEAKWDDLVGHMPLKICYPALDNEEWRITTGSDPKNTPWSYHNGGSWPTLLWQFTLACIKMGRTELAQKAVALAEKRLPVDSWPEYYDTRTGKFIGKQARMYQTWTIAGFLTSKMLLKDPETASRLFWEEDYELLDICVCGLSKNGRKRCSRGAARSQILPKTEGASASAAFFKPGTVVEVSSEDEGFRGSWFSGTIIRHLASDRFLVEYHNLMADDKSSKNLREILHIRQLRPILPPETGQIFKFGDEVDAFYNDGWWEGFITEELENDKFAVYFRASKEQLVFSKEQLRIHREWFDHKWVPPLQQKNDESNEAAKPDEFVQGATVEVSSDEDGFSGAWFEATIVEIKGNDKFVVEYQTLLADDDSNLLREEIDVFHIRPPPPNNNADGQFKLLDEVDALYNDGWWVGVISKVLADSKYVIYFRSSNEELEFHHSHLRLHQDWIHGKWVMPSKAMKL* 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1394 942 MobiDBLite consensus disorder prediction 26 52 - -
Vra8g1394 942 CDD TUDOR 822 865 IPR002999 -
Vra8g1394 942 Pfam Alkaline and neutral invertase 165 604 IPR024746 GO:0033926
Vra8g1394 942 SUPERFAMILY Six-hairpin glycosidases 165 596 IPR008928 GO:0005975
Vra8g1394 942 Gene3D - 196 594 IPR012341 GO:0005975
Vra8g1394 942 Pfam Agenet domain 731 789 IPR008395 -
Vra8g1394 942 Pfam Agenet domain 660 721 IPR008395 -
Vra8g1394 942 Pfam Agenet domain 808 868 IPR008395 -
Vra8g1394 942 PANTHER ALKALINE/NEUTRAL INVERTASE A, MITOCHONDRIAL 91 644 - -
Vra8g1394 942 SMART agenet_At_2 726 782 IPR014002 -
Vra8g1394 942 SMART agenet_At_2 655 724 IPR014002 -
Vra8g1394 942 SMART agenet_At_2 874 930 IPR014002 -
Vra8g1394 942 SMART agenet_At_2 803 871 IPR014002 -
Vra8g1394 942 Gene3D - 789 876 - -
Vra8g1394 942 PANTHER - 91 644 IPR024746 GO:0033926
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1394 Vra-Chr8 30828133 30846570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1394 815 928 PHD Transcription Factor Family AT5G58610 28.358 1.88e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1394 - - gmx:100797025 1155.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0877 3 8867974 8871352 Vra8g1394 8 30828133 30846570 PCT