Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1388 ATGGAGTCTTTTCAGCCCAACGTAGATTCAAGTAATTCAGAAACGTTGCGAGAATCTAATCAAAAGAAGCGCAGGAAAATCGGAGACCACGCCGCCGATCACAATTCCGCCAACGCTGTCCCTTGGAGATCCGAGGCGGAGCAACGGATCTACTCTCGCCGCCTCGTCGAGGCTCTCCGCCGGACTCCATCATCGGTGGCCAGGCCATCGGCCGCCGGCCAGGTGCGCGAGACGGCCGACCGAATTCTCGCCGCCACCGCAAGAGGCCGAACGCGGTGGAGCCGCGCGATTCTCGGCCGGTGGAGGAAGCTCCGCACGCAGCACAAGAAGGCGAAGAAGACATCGTCCACCGGATTGAAGAGAACGAGGATCAACGGCGGAGAGAGGAGGAACCGGTTACCGGCTGTGCAGAAGAAAGCGCGCGTTCTCAGCCGGTTGGTTCCCGGTTGCCGGAAGGTCTCGTTCCCAAACCTTCTGGAAGAAGCCACGGACTATATCTCCGCCTTGGAGATGCAAGTGCGAACCATGACGGCTCTAGCAGAATTACTCTCTGGCGGCGCTGCGGCTGGTCTCGACGGTGGCGCGTTGAGTTGA 594 0.601 MESFQPNVDSSNSETLRESNQKKRRKIGDHAADHNSANAVPWRSEAEQRIYSRRLVEALRRTPSSVARPSAAGQVRETADRILAATARGRTRWSRAILGRWRKLRTQHKKAKKTSSTGLKRTRINGGERRNRLPAVQKKARVLSRLVPGCRKVSFPNLLEEATDYISALEMQVRTMTALAELLSGGAAAGLDGGALS* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1388 197 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 15 196 IPR044660 GO:0006355
Vra8g1388 197 MobiDBLite consensus disorder prediction 16 32 - -
Vra8g1388 197 MobiDBLite consensus disorder prediction 1 41 - -
Vra8g1388 197 MobiDBLite consensus disorder prediction 1 15 - -
Vra8g1388 197 CDD bHLH_AtIBH1_like 125 180 IPR044549 GO:0006355
Vra8g1388 197 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983
Vra8g1388 197 PANTHER TRANSCRIPTION FACTOR BHLH150 15 196 - -
Vra8g1388 197 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 185 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1388 Vra-Chr8 30771021 30771985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1388 1 176 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 44.560 9.80e-38 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1388 - - gmx:100807196 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0883 3 8900375 8901388 Vra8g1388 8 30771021 30771985 PCT