Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1387 ATGGAGAAAAAAGAGGAGATAGTACTTCCATTGCCATCGGAGACCCATCTCAAGGACCTTCCTAATGTTTCCTCCACCTCAAGGCCTGTTGGGTCCCACAAAGGGCACTGTTCTCCGGGTGATGACTCCGACAGCTTCTATGATAAACTCGTCGAGTTGTTGGAGTCTTCTGGACTCACTCTCATTTTCAATGTTCGAGAAACACTGCTGGACTTGTACCTGTTTTACTTGGAGGTGACAAGAAGAGGAGGATATCGCCAGGTTGGTCGAGAAAGGAAGTGGGGTGAAGTTGTGATTGCCCTGAAATTGGAAGGTGATAGTGTGAAGTTATGTGCTCAAGTTGAAAGGATTTACGCACATCTTCTCTACCAGTTTGAGCAATTGTACTTCTACAGGCGTCCTGAAAAGCTAGCTTTCCGATCTGCCAGCAACAAAGAAGAAGGTCCGCTTAGGAAGAAGAGGATTTCAACTGCGAGTTTGCCTCATATGATGGACAGTAAAGATGATCAGAAGGCCACAGAAATGTCCAAGCAATACCACATGACAGCTGGGGCTGGGTATGTGCAACAGCCTGTGCTTTTACCAACACCTCCGAAAGAAAAGAAGAAACGCCGAGGTGCCCCGGTGGGACGAAAGACTGCATATCAGATATTCCTCAAGCATGAATGTGCTCGGTTGAAAAGTTGCAATGAGGTCTTGGATGGAAAAATACTGAGTATGGCTATTCATTCATGGAGGACCATGTCTGAAACTGAGAAACAGCCATATGTGGAGGAAAGCAAGAAGAACAAAGAAGAAATTAAGGAAGCAATGGTTAGACGCAGTAAACAGCAGAGCAGCCAAGATACCAACCAAGAGACCAGGGAAGAGAAGTGGTCTAGTATTTGTGGTGATTACCATGTAACTTTGCAACCTGAAGCAGATGTAGCTCTTAAAATGACTGAAAAAGCACCAATGGATCCTTCATTTCAGATGGATTGGGATGGTAATTGTTCTCTTGATTTTGCAACAAGGGAATCCGAGTAA 1026 0.4493 MEKKEEIVLPLPSETHLKDLPNVSSTSRPVGSHKGHCSPGDDSDSFYDKLVELLESSGLTLIFNVRETLLDLYLFYLEVTRRGGYRQVGRERKWGEVVIALKLEGDSVKLCAQVERIYAHLLYQFEQLYFYRRPEKLAFRSASNKEEGPLRKKRISTASLPHMMDSKDDQKATEMSKQYHMTAGAGYVQQPVLLPTPPKEKKKRRGAPVGRKTAYQIFLKHECARLKSCNEVLDGKILSMAIHSWRTMSETEKQPYVEESKKNKEEIKEAMVRRSKQQSSQDTNQETREEKWSSICGDYHVTLQPEADVALKMTEKAPMDPSFQMDWDGNCSLDFATRESE* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1387 341 MobiDBLite consensus disorder prediction 252 275 - -
Vra8g1387 341 MobiDBLite consensus disorder prediction 14 41 - -
Vra8g1387 341 MobiDBLite consensus disorder prediction 250 291 - -
Vra8g1387 341 SUPERFAMILY HMG-box 191 271 IPR036910 -
Vra8g1387 341 Gene3D High mobility group box domain 197 298 IPR036910 -
Vra8g1387 341 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 208 275 IPR009071 -
Vra8g1387 341 SMART bright_3 41 131 IPR001606 GO:0003677
Vra8g1387 341 Gene3D - 33 148 IPR036431 GO:0003677
Vra8g1387 341 Pfam ARID/BRIGHT DNA binding domain 43 126 IPR001606 GO:0003677
Vra8g1387 341 SMART ARID_2 37 126 - -
Vra8g1387 341 ProSiteProfiles ARID domain profile. 40 130 IPR001606 GO:0003677
Vra8g1387 341 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 24 325 - -
Vra8g1387 341 SUPERFAMILY ARID-like 42 136 IPR036431 GO:0003677
Vra8g1387 341 MobiDBLite consensus disorder prediction 18 32 - -
Vra8g1387 341 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 24 325 - -
Vra8g1387 341 CDD HMGB-UBF_HMG-box 208 271 - -
Vra8g1387 341 Pfam HMG-box domain 210 272 IPR009071 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1387 42 272 ARID Transcription Factor Family AT3G13350 24.715 1.45e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vra8g1387 ARID 1.5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1387 - - var:108325455 649.432