Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1386 ATGGAGTTACTTAGCAGGGAGATTATTCTTACTATTGCTGTCATTGTTGTTTCTTCTTCGGGGATTTGTAGAGCAGTGGACTGTGGTGGCCGGCAAATTTCAAGCACAATCGTAGTTGGTAGCAAGTCATCAAATTTCACATCAATTCAAGATGCCATTGATTCAATACCAAGAAATAACTCGAAATGGGTAAAAATTCAGATAAATGGTGGCACATATAAAGAGAGGGTTAGCATCCCAGTGGATAAGGCATGCACCTTTATCCAAGGACAAGGGGCAGATGTTACCACCATTACATCCGATGACCACTCGGCAACAAATACTAGTGCCACATTCACTTCCTTTTCAATCAATGTTGTTGTATCAGAAATTACTTTTCAGGGAAGATCATTGGAGGAGATGTCAGGTGAGAATGAAGAGGATGTTGGAACCGGGGAAAAATCAGAACAATCATGGTTCTTGCTTGATATTGTGTTTTACAGTCAAAATCTTTTCCAGAAGGACATCTTCAGTGCAATTGGTTGGATACCTCCAGCCAAAACCATGAATGCTATTGAGGAGGTGAAATGGTACCATTGCGTTTTTGCAACATCAAGCGCCTTTAGTACCTGA 612 0.4085 MELLSREIILTIAVIVVSSSGICRAVDCGGRQISSTIVVGSKSSNFTSIQDAIDSIPRNNSKWVKIQINGGTYKERVSIPVDKACTFIQGQGADVTTITSDDHSATNTSATFTSFSINVVVSEITFQGRSLEEMSGENEEDVGTGEKSEQSWFLLDIVFYSQNLFQKDIFSAIGWIPPAKTMNAIEEVKWYHCVFATSSAFST* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1386 203 Gene3D MFS general substrate transporter like domains 149 202 IPR036259 -
Vra8g1386 203 PANTHER PECTINESTERASE 1 153 - -
Vra8g1386 203 Pfam Pectinesterase 37 136 IPR000070 GO:0030599|GO:0042545
Vra8g1386 203 SUPERFAMILY Pectin lyase-like 34 129 IPR011050 -
Vra8g1386 203 Gene3D - 20 148 IPR012334 -
Vra8g1386 203 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1386 Vra-Chr8 30738664 30739685 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1386 32 129 Carbohydrate Esterase AT2G19150 44.444 5.59e-23 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1386 - - vra:106770511 390.963