Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1382 ATGGATTTCCAGGGATTCCTGAACGACTTGCAGGATTGGGAACTTTCTAGAAAGGATAAAACACAAACAGTGAAGTCGCAAAAGGAAAATCAATTCACAAAAGCTTCTTCGTCTTCTCGACTTACTGGACCTGTGGGTGTGGATAAGGCAGCAAAAGCAGATACTAAATCTTTTGATTATGCAGGAAATTCTCCAGGATTGTACGATTTTTCAAAAATTAGTGATCCTTTGAATCGGTTGCATGGTAGTTTTGTTCCTGAAGATGTTCCTGATGCTGCTTCTGAGAAAGATCTGGGTAATGAGTTTTTCAAGCAGAAGAAATTTAAGGAAGCTAGAGACTGCTATTCAAGGAGCATTGCCCTATCACCAACAGCTGTAGCATATGCAAATAGGGCAATGGCCAATATCAAGCTCAGAAGATTCCAAGAGGCGGAGGATGACTGCACAGAGGCCTTGGATCTTGATGATCGTTACATAAAAGCATATTCACGAAGAGCAACAGCTAGAAAAGAACTTGGGAAAATTAAAGAATCAATGGAGGATGCTGAATTTGCTTTGAGGTTGGAACCAAACAATCAAGAAATCAAGAAACAGTATGCCGATGCTAAATCTTTGTATGAAAAAGATATTCTTCAGAAAGCAACAGGAGCTATGAGAAGCACTGTACAGGGAACTCAAAAAGTAGGAAAGTCAGAGGAAAAAGTTAACGGAGGTAGCATCCACCCCATTTCACATGGTACTCAAAAGTCCGGTCCAGCTGAAATTAATCATAAAAAGGTTAATGAGCAGCAAATACCTGTTAAAGAATCACTTATAACAGAGGAGGTCGATAGCAGAGACACAATAACCAGAAAAAGGCCTCAAGCACAAGGTGGTGATGATTCTATGAAAGTTTTGACTGCAAGTAACAGTTTGGAGCAGAGAAATCACAGAATTAATAAGCCAGAAATGAAAGCATCTGTTCAACAGCTTGCTTCTCGTGCTGCTTCTAGAGCCATGGCTGAAGCTGCTAAAAACATAACACCACCAACCACTGCGTACCAGTTTGAGGTCTCATGGAGATCATTTTCAGGTGATCTTGCTCTGCAGGCTCGTCTATTAAAGGCTATATCTCCCCGTGAATTACCGAAAATATTTAAAAATGCTTTATCTTCTACCGTACTCGTTGACATCATCAAGTGTCTTTCATCTTTTTTCACTGAGGACATGGATCTGGTTGTCAGTTATATAGAGCATTTGATCAAAGTTCCAAGATTTGACATGATTGTAATGTGCCTTTCATCAACAAATAAGGATGACATACGCAAGATCTGGGATGAAGTGTTCAAAAGTGAGGCAACACCAATTGAGTATGCAGAGATTCTAGACAACCTCCGATCAAAGTTCTGCCTTGGACAGTGA 1401 0.4019 MDFQGFLNDLQDWELSRKDKTQTVKSQKENQFTKASSSSRLTGPVGVDKAAKADTKSFDYAGNSPGLYDFSKISDPLNRLHGSFVPEDVPDAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIKLRRFQEAEDDCTEALDLDDRYIKAYSRRATARKELGKIKESMEDAEFALRLEPNNQEIKKQYADAKSLYEKDILQKATGAMRSTVQGTQKVGKSEEKVNGGSIHPISHGTQKSGPAEINHKKVNEQQIPVKESLITEEVDSRDTITRKRPQAQGGDDSMKVLTASNSLEQRNHRINKPEMKASVQQLASRAASRAMAEAAKNITPPTTAYQFEVSWRSFSGDLALQARLLKAISPRELPKIFKNALSSTVLVDIIKCLSSFFTEDMDLVVSYIEHLIKVPRFDMIVMCLSSTNKDDIRKIWDEVFKSEATPIEYAEILDNLRSKFCLGQ* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1382 466 SMART tpr_5 92 125 IPR019734 GO:0005515
Vra8g1382 466 SMART tpr_5 126 158 IPR019734 GO:0005515
Vra8g1382 466 SMART tpr_5 159 192 IPR019734 GO:0005515
Vra8g1382 466 SUPERFAMILY TPR-like 90 207 IPR011990 GO:0005515
Vra8g1382 466 ProSiteProfiles TPR repeat profile. 159 192 IPR019734 GO:0005515
Vra8g1382 466 MobiDBLite consensus disorder prediction 26 43 - -
Vra8g1382 466 MobiDBLite consensus disorder prediction 19 47 - -
Vra8g1382 466 Pfam Potential Monad-binding region of RPAP3 342 431 IPR025986 -
Vra8g1382 466 MobiDBLite consensus disorder prediction 221 253 - -
Vra8g1382 466 Pfam Tetratricopeptide repeat 127 155 IPR019734 GO:0005515
Vra8g1382 466 PANTHER OS05G0129900 PROTEIN 1 465 - -
Vra8g1382 466 MobiDBLite consensus disorder prediction 275 291 - -
Vra8g1382 466 ProSiteProfiles TPR repeat profile. 92 125 IPR019734 GO:0005515
Vra8g1382 466 MobiDBLite consensus disorder prediction 275 295 - -
Vra8g1382 466 Gene3D Tetratricopeptide repeat domain 85 190 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1382 96 162 U-box Gene Family AT3G07370 39.706 1.51e-08 53.9