Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1380 ATGGAAAACTTTTACAAGCTCAACTCCCTCCTATCTTGTGCCGAGGATGTTGTTAGAGGAGTCAACGTCAGCGTTTCCGCCGCCGCCGCATCTGAATTGAATCTAGGACTTGTGGCCAATAACTTCCTTCAGCTAGAAGAGCCAGAAACTTCCGATATGTCGGAACGGTTCATCAAGACCCAGATCGCCACTCACCCTCTTTATCCAAATCTAGTATCTGCTTACATAGAATGCCGAAAGGTTGGAGCACCGCCAGAACTTGCTTCACTTCTTGAAGAAATAGCCCGTGAAAGCCACCCGACGCATGCTCTTCGTGAGATAGGAGATGATCCCGAGCTTGACGAGTTCATGGAATCATACTGCGAAGTTCTTCATAGATACAAGCAGGAGTTGTCCAAGCCATTCGACGAAGCGACCTTGTTTTTGTGTAGTATCGAATCACAACTCAGCAATCTTTGTAAGGGAACACTTGCATTGCCACTGGATAACAACCCCTCAGACGAGGCGGCTGGGACATCAGAAGATGAATTGAGTTGGGAGAAGATGGAAGCAGTGGAAGGTGTCGAATCTTCTGGGTCTCGTCCCGGTGATCAAGAGCTTAAAGAAATGCTCCTTCGTAAGTATGGTGGTTATCTTAGCAGCTTAAGAAAGGAATTTTTGAAGAAAAGGAAAAAGGGTAAACTTCCAAAGGAGGCAAGGAGGATTCTCTTGGACTGGTGGAGCACTCACTATAGGTGGCCTTATCCTACGGAGGAGGAGAAAGTGCAACTATCAGAAATGACAGGACTTGATCAAAAGCAGATAAACAATTGGTTCATCAACCAAAGGAAACGGCATTGGAAACCATCTGAAGACATGCGATTTGCGATTATGGATGGTGTGAGTGGCAGCGCCATAGGTAGAGGACCTATGTAG 915 0.4645 MENFYKLNSLLSCAEDVVRGVNVSVSAAAASELNLGLVANNFLQLEEPETSDMSERFIKTQIATHPLYPNLVSAYIECRKVGAPPELASLLEEIARESHPTHALREIGDDPELDEFMESYCEVLHRYKQELSKPFDEATLFLCSIESQLSNLCKGTLALPLDNNPSDEAAGTSEDELSWEKMEAVEGVESSGSRPGDQELKEMLLRKYGGYLSSLRKEFLKKRKKGKLPKEARRILLDWWSTHYRWPYPTEEEKVQLSEMTGLDQKQINNWFINQRKRHWKPSEDMRFAIMDGVSGSAIGRGPM* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1380 304 SMART ELK_2 199 220 IPR005539 GO:0003677
Vra8g1380 304 Pfam ELK domain 199 220 IPR005539 GO:0003677
Vra8g1380 304 ProSitePatterns 'Homeobox' domain signature. 257 280 IPR017970 GO:0000981|GO:0006355
Vra8g1380 304 SMART HOX_1 221 286 IPR001356 GO:0003677
Vra8g1380 304 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 293 - -
Vra8g1380 304 Pfam KNOX2 domain 107 153 IPR005541 GO:0003677|GO:0005634
Vra8g1380 304 Pfam KNOX1 domain 58 99 IPR005540 GO:0003677|GO:0005634
Vra8g1380 304 ProSiteProfiles ELK domain profile. 199 219 IPR005539 GO:0003677
Vra8g1380 304 SUPERFAMILY Homeodomain-like 221 294 IPR009057 -
Vra8g1380 304 SMART KNOX1_2 56 100 IPR005540 GO:0003677|GO:0005634
Vra8g1380 304 ProSiteProfiles 'Homeobox' domain profile. 219 282 IPR001356 GO:0003677
Vra8g1380 304 CDD homeodomain 231 283 IPR001356 GO:0003677
Vra8g1380 304 Pfam Homeobox KN domain 239 278 IPR008422 GO:0003677|GO:0006355
Vra8g1380 304 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 1 293 - -
Vra8g1380 304 Gene3D - 217 289 - -
Vra8g1380 304 SMART KNOX2_2 103 154 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1380 Vra-Chr8 30651525 30655767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1380 52 297 Homeobox Transcription Factor Family AT1G23380 55.294 7.20e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vra8g1380 KNOX2 9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1380 - - var:108324363 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0886 3 8943421 8947510 Vra8g1380 8 30651525 30655767 PCT