Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1377 TTGGAAACCAGGGTGAAGAATGCGGTGGTTACTGTGCCTGCTTATTTCAATGACTCTCAGCGTAAGTCTACCATAGATGCTGGAACCATTGCTGGCCTTAACATCATACGGATAATCAACGAACCAACTGCTGCAGCTATTGCATATGGTCTTGACCGAAGGATTAATTCTGTTGGAGAGAGAAACATTTTCATTTTTGATCTCGGTGGTGGTACTTTTGATGTTTCTATTCTAACGATTAAGGGTAAGATCTTTGAAGTTAAGGCAACAACTGGAAACACTCACCTTGGAGAAGAGGACATTGATAACAGAATGGTTAACTACTTTGTGGAGAAACTAAAGAAAGAAAAGAAATTGGACATTAGTGGAAACGCTAGAGCGTTGAGGAGATTGAGAAGTGCCTGTGAGAGGGCCAAGAGGACACTGTCACATGCTGTCAGTGCCACAATTGAGGTAGATGGTTTATCTAATGGCATTGACTTTTGTTCTTCAATCACTCGTGCAAGGTTTGAACAAATCAACATGGAGCTCTTTAACCAGTGTATGGAGACAGTAGATAGGTGCCTTGCTGATGCAAAAATGGAGAAGAGAAGTATGCATGATGTTGTTCTTGTTGGTGGGTCTTCTAGGATTCCCAAAGTGCAAGAATTATTGGATGATTTCTTTGAGGGAAAGGTTCTGTGCAAAAGCATAAACCCTGATGAAGCTGTAGCCTATGGTGCTGCTGTGCAGGCTGCTTTGTTGAGTGAAGGTATTAAGAATGTTCCAGACGTGGTGTTGCTGGATGTAACACCGTTATCACTTGGTATTAAAACAAAAGGCGATATCATGAGTGTACTGATTTCAAGGAATACTACTATTCCTGTAAAGAGGACACTTCCATATTGTACAACTCATGATAACCAATCATATGTTCGAATAAAGGTTTATGAGGGTGAGAGAAGAAGAGCCAGTGATAACAATTTTTTGGGTTCTTTTAAACTTTCTGGCTTTCCTAAAGCTCCTAGGGGCCATCCTTTTGATGTGTGCTTTGCCATAGATGAAAATGGTATACTATCTGTCTCTGCCAAGGAAAAAACAACTGGCATCAGCAATAAGATCATCATAACCAATGACATAGAACGACTGCCAACGGAAGAAATTAATAGAATGATTCAAGAAGCAGAGGTATACAAAGCTGAAGATACGAAATTCCTTAGGAAGGCAAAAACAATGAATAAAATTGATGACTATGCTTACAAGATAAAGAAAGCTTTGGAAAAAGAGAATTTCAGTTCAAAAGTTTGCTCAGAAGACAGGAAAAAGATCAGTTCTGCA 1317 0.3964 LETRVKNAVVTVPAYFNDSQRKSTIDAGTIAGLNIIRIINEPTAAAIAYGLDRRINSVGERNIFIFDLGGGTFDVSILTIKGKIFEVKATTGNTHLGEEDIDNRMVNYFVEKLKKEKKLDISGNARALRRLRSACERAKRTLSHAVSATIEVDGLSNGIDFCSSITRARFEQINMELFNQCMETVDRCLADAKMEKRSMHDVVLVGGSSRIPKVQELLDDFFEGKVLCKSINPDEAVAYGAAVQAALLSEGIKNVPDVVLLDVTPLSLGIKTKGDIMSVLISRNTTIPVKRTLPYCTTHDNQSYVRIKVYEGERRRASDNNFLGSFKLSGFPKAPRGHPFDVCFAIDENGILSVSAKEKTTGISNKIIITNDIERLPTEEINRMIQEAEVYKAEDTKFLRKAKTMNKIDDYAYKIKKALEKENFSSKVCSEDRKKISSA 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1377 439 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 248 428 IPR029047 -
Vra8g1377 439 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 254 406 IPR029047 -
Vra8g1377 439 SUPERFAMILY Actin-like ATPase domain 60 249 IPR043129 -
Vra8g1377 439 Pfam Hsp70 protein 2 438 IPR013126 GO:0005524|GO:0140662
Vra8g1377 439 PRINTS 70kDa heat shock protein signature 8 28 - -
Vra8g1377 439 PRINTS 70kDa heat shock protein signature 71 81 - -
Vra8g1377 439 PRINTS 70kDa heat shock protein signature 199 215 - -
Vra8g1377 439 PRINTS 70kDa heat shock protein signature 231 251 - -
Vra8g1377 439 PRINTS 70kDa heat shock protein signature 257 276 - -
Vra8g1377 439 PRINTS 70kDa heat shock protein signature 337 353 - -
Vra8g1377 439 PANTHER HEAT SHOCK 70 KDA PROTEIN 1 439 - -
Vra8g1377 439 PANTHER HEAT SHOCK PROTEIN 70KDA 1 439 IPR013126 GO:0005524|GO:0140662
Vra8g1377 439 ProSitePatterns Heat shock hsp70 proteins family signature 3. 202 216 IPR018181 -
Vra8g1377 439 Gene3D - 54 228 - -
Vra8g1377 439 SUPERFAMILY Actin-like ATPase domain 3 53 IPR043129 -
Vra8g1377 439 ProSitePatterns Heat shock hsp70 proteins family signature 2. 65 78 IPR018181 -
Vra8g1377 439 Gene3D - 2 246 - -
Vra8g1377 439 Gene3D Actin; Chain A, domain 4 97 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1377 Vra-Chr8 30580638 30581954 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1377 1 439 Calmodulin-binding Proteins AT3G12580 65.533 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1377 K03283 - gmx:102667572 646.351