Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1374 ATGGGTAGGTCACCTAGCAGTAACGAGAGTAATGTTAAGAAAGGGCCATGGACACCGGAAGAAGATGGAAAGCTAATGGATTATATTAGCAAACATGGAAGAGGAACGTGGAGAACACTTCCAAAGCATGCTGGTCTAAATAGGAACGGAAAAAGCTGCAGGTTGAGGTGGGAAAATTATCTAAGACCAGATATTAAGAGAGGAAAATTAACTGAAGAGGAGGAGCAATTGATCATCAACCTTCATTCAGTTCTTGGAAACAAGTGGTCAAAGATTGCTACAAGTCTTCCAGGGAGAACTGATAACGAGATCAAGAATTATTGGAATACCACCATAAGAAAAAAGCTTCTCCACATGGGTATTGATCCTGAAACTCACAGGCCAAGAACTGACTTGAATTATCTGATGAATCTTTCCCAGTTGCTTGGCATGTCAAATTTGGGCACATCAATGAGTCCTTGGACCAACCCTACCAGTTTACAAACAGATGTCACTCAATTAGCCAAACTACAAGTGCTACAAAATATGTTACAACTTATGAACAACACTTCATTGATTAGCATGACTAATCCTTACCTCTTAGACAATCAAATTCTCAACCCACCATCACTTGATACATTCCTCCATGGAACAAACACCCTCCAAGTGAGAGATCCAATGTTAAGAGGTCCAGAATATCCAAACCCTATTGGTAACAACATATCCGATCCATTCTCTCAAACGCCCAGTGACTATTCTCAGCAGAACATCTTCAAATCAGGGATAGAAAAAGAAAATGAAACTAGTCATCAAGAAGTTCGTAGTTATACCAAAAACATTAACACTTCACAACAAAATCAAGCAGAAAATTTACTTCCACCGTTAGTTGCTTCGTGTCCTAGGACAACTACCTTCAACAAAATGCAGAGAAACTATAATGAAGCACAAAAGTCCACAGAGTCACCTTTCTCGACTTTTGAGGCTTGGGAGAAGTTTCTCATTGAAGATGATGAAGCAAGCGGTTCCTACTGGAAAGAGATTCTAGAGTAA 1029 0.3965 MGRSPSSNESNVKKGPWTPEEDGKLMDYISKHGRGTWRTLPKHAGLNRNGKSCRLRWENYLRPDIKRGKLTEEEEQLIINLHSVLGNKWSKIATSLPGRTDNEIKNYWNTTIRKKLLHMGIDPETHRPRTDLNYLMNLSQLLGMSNLGTSMSPWTNPTSLQTDVTQLAKLQVLQNMLQLMNNTSLISMTNPYLLDNQILNPPSLDTFLHGTNTLQVRDPMLRGPEYPNPIGNNISDPFSQTPSDYSQQNIFKSGIEKENETSHQEVRSYTKNINTSQQNQAENLLPPLVASCPRTTTFNKMQRNYNEAQKSTESPFSTFEAWEKFLIEDDEASGSYWKEILE* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1374 342 CDD SANT 16 61 IPR001005 -
Vra8g1374 342 Gene3D - 6 67 - -
Vra8g1374 342 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra8g1374 342 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Vra8g1374 342 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra8g1374 342 Gene3D - 70 116 - -
Vra8g1374 342 PANTHER MYB TRANSCRIPTION FACTOR 1 342 - -
Vra8g1374 342 MobiDBLite consensus disorder prediction 1 23 - -
Vra8g1374 342 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vra8g1374 342 CDD SANT 71 112 IPR001005 -
Vra8g1374 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vra8g1374 342 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 342 - -
Vra8g1374 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vra8g1374 342 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra8g1374 342 SMART sant 66 114 IPR001005 -
Vra8g1374 342 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1374 Vra-Chr8 30419187 30420443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1374 1 342 MYB Transcription Factor Family AT3G02940 45.584 2.79e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra8g1374 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1374 K09422 - gmx:100803906 514.612