Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1369 ATGGATTACACTCATCCTGCTTCATCTGATGCAGCATCCTCTTCAAAGACAAAAAGAAGCAAGGAGAAAAAGGGTGCTAAGAAATGCAAAGGAGTGAGGCTCTCCACCGATCCTCAGAGCGTGGCAGCAAGAGAACGAAGGCACAGAATCAGTGACAGATTCAAGATATTGCAGAGCATGGTCCCTGGTGGAAGCAAGATGGACACAGTGTCCATGTTGGAGGAAGCCATTCAGTATGTGAAGTACCTCAAAACTCAGATTTGGCTCCACCAAACCATGATCAATTTCTTAGATGATAACGACTCAATCTCCCCTATGTACCTTACTGATTTCTACTTCCCTTCTGACCCTTCTGAACAGTTCATTTTCCCTCAGCAAAATCCACCACTTGATCATAACATGCACAACTTTCCTCATCTTCCACCACCACAATGCAGCTTCCATGGTGAAGACACCACCTACTTCGATTCCTCTTTCAAATATTGGCCAGCTTAA 495 0.4465 MDYTHPASSDAASSSKTKRSKEKKGAKKCKGVRLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIQYVKYLKTQIWLHQTMINFLDDNDSISPMYLTDFYFPSDPSEQFIFPQQNPPLDHNMHNFPHLPPPQCSFHGEDTTYFDSSFKYWPA* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1369 164 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 34 83 IPR011598 GO:0046983
Vra8g1369 164 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 15 102 IPR045843 GO:0003700|GO:0006355
Vra8g1369 164 PANTHER TRANSCRIPTION FACTOR LAX PANICLE 1 15 102 - -
Vra8g1369 164 CDD bHLH_AtIND_like 35 94 - -
Vra8g1369 164 Pfam Helix-loop-helix DNA-binding domain 44 84 IPR011598 GO:0046983
Vra8g1369 164 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 39 95 IPR036638 GO:0046983
Vra8g1369 164 SMART finulus 40 89 IPR011598 GO:0046983
Vra8g1369 164 MobiDBLite consensus disorder prediction 1 44 - -
Vra8g1369 164 Gene3D - 38 92 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1369 Vra-Chr8 30128303 30129028 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1369 28 132 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 43.636 2.53e-22 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra8g1369 HLH 1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1369 - - pvu:PHAVU_010G073400g 265.774