Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1358 ATGGGAGAAAGCCGAGTCTCCCAATGTTCAAAGACAAGCCCTTCTAACATTGATGAGGAAGAGTGTGAAAGCCATGCGAATGAAGATCAAAGGAAGCAAAACAACAATGGAGGAAGCTCAAGCAACAGCACAGTGGAAGAGAGTGAGAAAAAGATTAGACCTTATGTTAGATCCAAGTTACCAAGGCTTCGATGGACACCTGATCTTCATCTTCGCTTTGTTCATGCTGTTCAACGACTTGGAGGACAAGAGAGAGCAACACCTAAACTTGTTCTTCAACTGATGAACATGAAAGGTTTGAGTATTGCACATGTCAAGAGTCATTTGCAGATGTTTAGGAGCAAAAAGGTGGATGACCGAAATCAAGTATTTTCCGATCATACCAGTCTTGTTGAAATTGGAGACAAAAATATTTATAATCTTAGCCAACTTTCCATGCTTCAAGGATACAATCCCAGTCAAAGTTCGTCCTACAGCTACACAAACAACAACTATCCAAGTTACGGATTCGGGGATGCTTCTTTTGGTAGCTACGAAAAGCTTGTGCACAGACCTTTGGATTGGTTTAATGGAATGTCTCGGGCAGGTTCATCCATTTGTGGTGAACAATCAACAAGCAAAACCCGTGAACCAAAATATGAGCTTTTCTCATTTGGTGCTTATGAAAATCTAAGCACAAGATTAAGCCACGTTGAACACACTCCATCAAATATTATTCAACAGAGAGCACAAAACCTGATGCCTGTAAATCCAACAACAGAATTGAAGAGACTGAAAAGGAAGGCTCAAGATTCATCACTTGATTTGGATCTGTCACTGAAACTAAACACAAAGATGGATGGTGAAGGAACAAAGTTGGAGGACAATGAAGTTGATAGCAACCTGTCCCTGTCGTTGTGCTCTCAATCCTCCTCTTCCAATCTCAGCAGCAGGTTAAAGGAAGCAAAAGATCGATGTGAGGAAAACGGGAAAAGGGCCAGTACTCTAGATCTGACTATATGA 1002 0.4122 MGESRVSQCSKTSPSNIDEEECESHANEDQRKQNNNGGSSSNSTVEESEKKIRPYVRSKLPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNMKGLSIAHVKSHLQMFRSKKVDDRNQVFSDHTSLVEIGDKNIYNLSQLSMLQGYNPSQSSSYSYTNNNYPSYGFGDASFGSYEKLVHRPLDWFNGMSRAGSSICGEQSTSKTREPKYELFSFGAYENLSTRLSHVEHTPSNIIQQRAQNLMPVNPTTELKRLKRKAQDSSLDLDLSLKLNTKMDGEGTKLEDNEVDSNLSLSLCSQSSSSNLSSRLKEAKDRCEENGKRASTLDLTI* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1358 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 117 IPR017930 -
Vra8g1358 333 SUPERFAMILY Homeodomain-like 60 115 IPR009057 -
Vra8g1358 333 Pfam Myb-like DNA-binding domain 63 111 IPR001005 -
Vra8g1358 333 MobiDBLite consensus disorder prediction 31 45 - -
Vra8g1358 333 PANTHER - 7 201 - -
Vra8g1358 333 PANTHER - 251 333 - -
Vra8g1358 333 MobiDBLite consensus disorder prediction 1 15 - -
Vra8g1358 333 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 7 201 IPR044848 GO:0003700
Vra8g1358 333 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 251 333 IPR044848 GO:0003700
Vra8g1358 333 MobiDBLite consensus disorder prediction 1 53 - -
Vra8g1358 333 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 61 116 IPR006447 GO:0003677
Vra8g1358 333 MobiDBLite consensus disorder prediction 16 30 - -
Vra8g1358 333 Gene3D - 60 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1358 Vra-Chr8 29842524 29844513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1358 27 194 G2-like Transcription Factor Family AT2G42660 41.954 2.02e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra8g1358 Myb_DNA-binding 7.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1358 - - gmx:102660246 436.032