Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1345 ATGGTATTTGGCATTTATACATACTTTTCTTTCTTGACCTTGTCCACTTGCTTTGAACCTATAAGTATATGCTTGGCATACATTTTTTGGAATCAAAATTCTCAAATGGCTCCAAAAACTCTCTTTGGCCTCCTCATCTTTCTCTTTCTCCTTGTTTCTTCCACTGCTTTTTCCTTCACATTCCATGGCTTCAATCAAAGCAATATCACCCGTGAAGAGAAAGCAAAGATTGACAACCAAGGTAGACTTGAGCTTACAAGAAGAGAAAACAATGTTGTCGGCCATGCATTCTACAACGAATCCATCATAATACTTGACAAAAATGCTTCAGTCGTCCAGCCAAAGGTTTTCTCCTTCAGTACATGCTTTGTTTTCTCAATTGTTTCACCAAGCTCTGGTCCTGGTGGCTTTGGTCTTGCCTTCACCGTAGCTCCTTCAACACGATTCCCACAAGCTGAAGGTGGCCATCTTCTTGGTCTTTTCAACAAATCCAATGATATGAACTCCTCAAATCACATCTTAGTGGTTGAGTTTGATACAGTGAATGGCTACAAAGATGCCACTGACACTGTAGGAAACCATGTTGGGGTGAACAAGAATGGTATGTCCTCAAATATATCTGAGCCTGCTGCTTACTTTGTAGATGGCAAAAAGGAAGAGTTCAACATGGAGAAGGCTGACGCTGTTTGTGTTTGGATTGAATATGATGGTGAAACAGAAATACTGAATCTCACAATATCCCCTTATTTGAAACCAAAACCAAGCAAACCTCTTATATCTGAGGCTGTTCATATCAAATCTGTCATGAAGGAGAGCATGTTTTTTGGTTTCTCTGCATCAACAGGTGAGAGGAAAGCAAGTGCTCATTATATTCTGGGGTGGAGTTTTGCATTGAATGGGGTTACCCCTCCATTAGATTATGCACTACTTCCAAAGCCACCACCAAAGGAGAAACAGTCACACTCTTTTCCTTGGATCAAGGTTATAGTTGGCATGTTGTCTGCTTTGACATTTACCTTGTTGTGCCTTTTTCTTTATGTGACACTCTATAAGAGATACATGGTATTTGAAACACTTGAGGACTGGGAAATGGATTGTCCTCACAGGTTCAGATACAGAGATCTTCACCTAGCAACAAAGGGGTTCGTAGAGAGCCAACTAATTGGAGTTGGAGGCTTTGGTTCTGTGTACAAAGGGGTGTTACCCAGCACAGGAACTGAGGTTGCTGTTAAAAGGATCCTGAGAACTCCAGCCAAAGGAATGAGGGAATTTGCAGCTGAGATTGAAAGCTTAGGAAGATTGAGGCACAAGAATTTGGTGAACCTTCAAGGGTGGTGCAAGCACAAGAATGATCTCCTTTTGGTTTATGATTACATTCCAAATGGGAGCCTTGACTCTCTCCTATTCAGCAGAAGCTTTGTTTTGGATTGGGATCAGAGATTCAGAATTCTCAAAGGTGTAGCTGCTGGGCTGTTGTATCTGCATGAAGAATGGGAGCAAGTGGTGATCCATAGAGATGTGAAATCTAGCAATATTCTTATTGATGGGGACTTTAATGCTCATTTAGGTGACTTTGGCCTAGCAAGGCTTTACAGCCATGATAAAGTTTCACACACAACAAGTGTAGTTGGAACTATAGGGTATATTGCACCAGAGTTAACTAGGACAGGAAAAGCATCTACAAGCTCTGATGTGTACGCATTTGGGGTCCTACTTCTTGAGGTGGTTGCAGGAACAAGACCTGTTGGTTCATCAGATCAGTTTTTCTTGGTGGATTGGGTTCTTGAAAATTTCCAACTGGGTCAGATTCTTGAAGTGGTTGATCCAAAGTTAGGTTCAATTTATGAGGAAGAGGAAGTAGAACTGGTTCTAAAATTGGGTCTGCTATGCTCTCAAAACAAAGCTGAGTATAGACCCTCTATCGAACAAGTGACTAGGTACCTAAACTTTGATGACCCTTTTCCTGATATCTCTGATTGCAGATACTATGATTCTCAAAGTAGCACGACAAGCTTAGGATTTTTAGAAGCAATGTCTACGGGTAAGACTTCATCCTCGTACAGTTTACCCTCCATTGACAGGACTACAATGTCCATAGAAGCTGGCAGATAG 2112 0.4138 MVFGIYTYFSFLTLSTCFEPISICLAYIFWNQNSQMAPKTLFGLLIFLFLLVSSTAFSFTFHGFNQSNITREEKAKIDNQGRLELTRRENNVVGHAFYNESIIILDKNASVVQPKVFSFSTCFVFSIVSPSSGPGGFGLAFTVAPSTRFPQAEGGHLLGLFNKSNDMNSSNHILVVEFDTVNGYKDATDTVGNHVGVNKNGMSSNISEPAAYFVDGKKEEFNMEKADAVCVWIEYDGETEILNLTISPYLKPKPSKPLISEAVHIKSVMKESMFFGFSASTGERKASAHYILGWSFALNGVTPPLDYALLPKPPPKEKQSHSFPWIKVIVGMLSALTFTLLCLFLYVTLYKRYMVFETLEDWEMDCPHRFRYRDLHLATKGFVESQLIGVGGFGSVYKGVLPSTGTEVAVKRILRTPAKGMREFAAEIESLGRLRHKNLVNLQGWCKHKNDLLLVYDYIPNGSLDSLLFSRSFVLDWDQRFRILKGVAAGLLYLHEEWEQVVIHRDVKSSNILIDGDFNAHLGDFGLARLYSHDKVSHTTSVVGTIGYIAPELTRTGKASTSSDVYAFGVLLLEVVAGTRPVGSSDQFFLVDWVLENFQLGQILEVVDPKLGSIYEEEEVELVLKLGLLCSQNKAEYRPSIEQVTRYLNFDDPFPDISDCRYYDSQSSTTSLGFLEAMSTGKTSSSYSLPSIDRTTMSIEAGR* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1345 703 Gene3D Transferase(Phosphotransferase) domain 1 459 659 - -
Vra8g1345 703 PANTHER - 45 687 - -
Vra8g1345 703 SMART serkin_6 382 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1345 703 Pfam Protein kinase domain 383 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1345 703 CDD STKc_IRAK 388 649 - -
Vra8g1345 703 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VI.1-RELATED 45 687 - -
Vra8g1345 703 SUPERFAMILY Protein kinase-like (PK-like) 365 655 IPR011009 -
Vra8g1345 703 Pfam Legume lectin domain 58 305 IPR001220 GO:0030246
Vra8g1345 703 SUPERFAMILY Concanavalin A-like lectins/glucanases 56 315 IPR013320 -
Vra8g1345 703 ProSiteProfiles Protein kinase domain profile. 382 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1345 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 502 514 IPR008271 GO:0004672|GO:0006468
Vra8g1345 703 CDD lectin_legume_LecRK_Arcelin_ConA 57 300 IPR001220 GO:0030246
Vra8g1345 703 Gene3D Phosphorylase Kinase; domain 1 367 458 - -
Vra8g1345 703 ProSitePatterns Protein kinases ATP-binding region signature. 388 419 IPR017441 GO:0005524
Vra8g1345 703 Gene3D - 55 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1345 Vra-Chr8 29677951 29680238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1345 59 673 Receptor kinase-like Gene Family AT5G01560 52.298 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vra8g1345 Pkinase 3.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1345 - - vra:106770487 1384.01