Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1331 ATGGTGGCTGAAGCAGAGGTTGTGTGTCAACAGAACGTGGGTATGTTGGATGTGAAGCATTTTCAAAACAAGGGAAACGATGTTCACGAGATCGGAGATGCAGATGCTAATTTGTCTTTGAGTTTTGACCGAGTTCGTGTCACTGAGTTGGTCTCTGCCGAATTACTCACTTCACAAGAAGATGCTAAGTCTGCAGACAGGATCTCAGATGCTGCTCTTGAATCTGCGGTTCTGCAGTTTATACCTTCCCTCCGTTCAGGTAGTTTTGCTGACATTGGACCAAGGAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCATCTCATATGGGATCACCATACAACTTTCCCAAGCCAAGTGCTTTTTATGGGGTGTTTGATGGCCATGGAGGACCTGAAGCTGCAGCTTATATAAGAAAAAACGTCATAAAGTTCTTCTTCGAAGATGTCAGTTTCCCACAGACTTCTGAAGTCAATAGTGTATTTCTGGAAGAGGTAGAGGATTCCCTCAGAAAGGCGTTTCTTTTGGCTGATTCAGCTTTGGCCGATGATTGCAGTGTGAATAGTTCATCAGGCACCACGGCCCTTACTGCTTTGATATTTGGAAGACTTCTAATGGTGGCCAATGCTGGCGACTGCCGAGCAGTTCTCTGTCGCAAAGGAGAGGCCATTGACATGTCTCAAGATCACAGACCTATTTATCCATCAGAGCGGAGGCGTGTTGAAGAATTGGGTGGCTACATAGATGATGGTTATCTCAATGGGGTTTTATCAGTTACCCGAGCACTAGGGGACTGGGACATGAAGTTACCTAAGGGTGGTCCCTCACCTTTGATTGCAGAACCGGAGTTCCGGCAAGTTGTTCTAACAGAGGATGATGAATTTCTCATCATAGGATGCGATGGCATATGGGATGTCATGTCAAGTCAGCATGCAGTTAGCCTTGTTCGCAGAGGCCTAAGGAGGCACGATGATCCTGAAAAATGTGCCAGGGACCTGGTTATGGAGGCACTACGCCTGAACACATTTGATAATCTCACTGTGATCATTGTATGTTTTTCTTCCCTCGACCACATGGAGCCAGAGCCATCCCCTCCTCGTCAACGGAAATTGAGATGTTGTAGCCTCTCTGCAGAGGCTCTTTGTAGCTTGAGGAGCTTGTTGGAAGGCAGTGCTAGCAACTGA 1191 0.4626 MVAEAEVVCQQNVGMLDVKHFQNKGNDVHEIGDADANLSLSFDRVRVTELVSAELLTSQEDAKSADRISDAALESAVLQFIPSLRSGSFADIGPRRYMEDEHIRIDDLSSHMGSPYNFPKPSAFYGVFDGHGGPEAAAYIRKNVIKFFFEDVSFPQTSEVNSVFLEEVEDSLRKAFLLADSALADDCSVNSSSGTTALTALIFGRLLMVANAGDCRAVLCRKGEAIDMSQDHRPIYPSERRRVEELGGYIDDGYLNGVLSVTRALGDWDMKLPKGGPSPLIAEPEFRQVVLTEDDEFLIIGCDGIWDVMSSQHAVSLVRRGLRRHDDPEKCARDLVMEALRLNTFDNLTVIIVCFSSLDHMEPEPSPPRQRKLRCCSLSAEALCSLRSLLEGSASN* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1331 396 ProSiteProfiles PPM-type phosphatase domain profile. 85 355 IPR001932 -
Vra8g1331 396 Gene3D - 58 361 IPR036457 -
Vra8g1331 396 SUPERFAMILY PP2C-like 79 357 IPR036457 -
Vra8g1331 396 SMART PP2C_4 75 353 IPR001932 -
Vra8g1331 396 PANTHER PROTEIN PHOSPHATASE 2C 1 378 IPR015655 GO:0004722|GO:0006470
Vra8g1331 396 PANTHER PROTEIN PHOSPHATASE 2C 49-RELATED 1 378 - -
Vra8g1331 396 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169
Vra8g1331 396 Pfam Protein phosphatase 2C 95 347 IPR001932 -
Vra8g1331 396 CDD PP2Cc 85 355 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1331 Vra-Chr8 29424309 29427237 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1331 98 392 PP2C-type Phosphatase Gene Family AT3G62260 71.959 1.26e-156 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1331 K14803 - gmx:100819791 736.873