Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1330 ATGAGGCATTCTCATATTTTACCACTAGCATTGTCTTTATATTTTCTTACTTTGTTTCTTCCCACCCAAGCTAGGTACCATTTCCATAAAAAACACAAACACTCGTATTATCATAATGCACCTGAAATTTCACCATCTCCTTCTCCATTGTCTGGACCTTCTAGCCCCCCTGATGAACCTCCTTGTCCTAGCCCCTCTGTTGATGACAACTACCAGAATACATCTAATAACCTGTTTGATGTTCGAGCATTTGGGGCCGTTGGAGATGGAGTAACTGATGCTACAGAGTCGTTCAAGATGGCATGGGACACTGCCTGCCAAAGTGATTCGGCTATTAAAGTTATCCTCGTTCCTCAAGGTCTCTCCTTCGTCATTCAATCTACTATCTTCACAGGTCCTTGTAAAGGTGGCTTAGTACTAAAGGTTGATGGCACTCTTATGCCACCTGATGGACCTGACTCTTGGCCAAAGAACAACAGTAAGCGTCAATGGCTTGTCTTTTATAGAGTCAATGGTTTGTCACTTGAAGGAAGTGGTTTAATAGATGGTAGAGGAGCAAAATGGTGGGACCTCCCTTGTAAGCCTCATAAGGGACCCCATGGGACAACATCTCCAGGACCTTGCGACAGCCCTGTTGCCATAAGGTTTTTCATGAGTTCCAACTTGAGTGTACAAGGACTTAAAATCAAGAACAGCCCCCAGTTTCACTTCAGATTCGATGGCTGCGAAAGCGTCCACGTGGAATCAATATACATAACAGCTCCAGCACTCAGCCCCAACACTGATGGAATACACATAGAAAATACCAATGACGTCAAAATATACAATTCGGTCATTTCCAATGGTGATGACTGCGTGTCCATTGGAGCCGGTTGCCATGATGTTGATATAAAGAACATGACATGTGGACCTGGTCATGGTATAAGCATTGGTAGTCTGGGAAATCACAACTCCAGAGCCTGTGTTTCAAACATTACGGTGAGGGACTCGGTTATAAAAGTGTCAGATAACGGGGTTAGGATAAAGACGTGGCAAGGTGGATCAGGATCAGTATCAGGAGTGACATTTAGTAATATACATATGGAAAGTGTAAGAAACCCCATCATAATTGATCAGTTTTACTGCCTGAGTAAGGATTGCTCCAACAAGACCTCTGCAGTGTTTGTATCGAATATATCTTACACAAACATAAAAGGAACATATGATATAAGGCACCCTCCTATGCATTTTGCTTGCAGTGACTCTGTCCCATGCACCAACTTGACCCTCTCAGATATTGAGCTTCTTCCAGCTCAAGGAGACATTGTGCTTGATCCTTACTGCTGGAGTGCCTATGGAAGCTCTGAGACACTAACCATTCCCCCAGTCTCTTGCTTGCTTGAAGGCCTTCCCCAGTCCATTTCAGGAAATGACGTAGATCATTGCTGA 1428 0.4384 MRHSHILPLALSLYFLTLFLPTQARYHFHKKHKHSYYHNAPEISPSPSPLSGPSSPPDEPPCPSPSVDDNYQNTSNNLFDVRAFGAVGDGVTDATESFKMAWDTACQSDSAIKVILVPQGLSFVIQSTIFTGPCKGGLVLKVDGTLMPPDGPDSWPKNNSKRQWLVFYRVNGLSLEGSGLIDGRGAKWWDLPCKPHKGPHGTTSPGPCDSPVAIRFFMSSNLSVQGLKIKNSPQFHFRFDGCESVHVESIYITAPALSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGAGCHDVDIKNMTCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSDNGVRIKTWQGGSGSVSGVTFSNIHMESVRNPIIIDQFYCLSKDCSNKTSAVFVSNISYTNIKGTYDIRHPPMHFACSDSVPCTNLTLSDIELLPAQGDIVLDPYCWSAYGSSETLTIPPVSCLLEGLPQSISGNDVDHC* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1330 475 Pfam Glycosyl hydrolases family 28 109 428 IPR000743 GO:0004650|GO:0005975
Vra8g1330 475 ProSitePatterns Polygalacturonase active site. 299 312 IPR000743 GO:0004650|GO:0005975
Vra8g1330 475 Gene3D - 65 460 IPR012334 -
Vra8g1330 475 PANTHER - 7 465 - -
Vra8g1330 475 MobiDBLite consensus disorder prediction 39 70 - -
Vra8g1330 475 SMART pbh1 269 290 IPR006626 -
Vra8g1330 475 SMART pbh1 292 312 IPR006626 -
Vra8g1330 475 SMART pbh1 322 343 IPR006626 -
Vra8g1330 475 SMART pbh1 351 372 IPR006626 -
Vra8g1330 475 SMART pbh1 242 268 IPR006626 -
Vra8g1330 475 SUPERFAMILY Pectin lyase-like 76 463 IPR011050 -
Vra8g1330 475 MobiDBLite consensus disorder prediction 46 64 - -
Vra8g1330 475 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 7 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1330 Vra-Chr8 29403122 29405504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1330 67 475 Glycoside Hydrolase AT1G02460 72.087 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1330 - - gmx:100776338 870.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0800 3 8186052 8188949 Vra8g1330 8 29403122 29405504 PCT