Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1325 ATGGATACTAACTGTGGGCCCCTGGTAAAGACACAAGCCAAGATGCAGTATGCTGAAAACGAGATGTTAGGCCTCAGAAAAGGTCCATGGACGCTTGACGAGGACACCATTCTCCTCAATTACATCACCACCCATGGTGAAGGTCACTGGAATTCCCTCGCACGATCTGCAGGTTTAAGGAGGAGTGGGAAGAGTTGCAGATTAAGGTGGCTGAACTACTTGCGCCCCGATGTGCGGCGTGGAAACATCACACTCCAAGAACAAATACTAATTCTCGACCTTCACTCTCGGTGGGGCAACAGGTGGTCGAAGATTGCACAGCACCTGCCAGGAAGAACGGACAATGAAATAAAGAACTATTGGAGGACGAGAGTGATAAAACAGGCGAAGCAACTCAGGTGCGATGTCAACAGCAAAGAGTTCAGAGACACCTTGCGTTATGTGTGGATGCCGCGCTTACTGGAACGGATTCAGCCCGCATCGCAAATTCTCCAGCCTCAGATCAAACTGGACCCAGGCCCAACTCAAATTCAGGGTTTTCACGGTTTAGATTCGGTGACCCCCGCCGGTTCTTTCTCGGACTCATCATCCGTGGAGCTCCATAGCGATTGTTCGGGTTCGGGTCTGGATCCGTGGGAAGAAGGGAATGGTGGGGGTGAATGGTTGGAAAGTTTGTGGAATGAGCTCGAAATAAAATACAGTTCCCTTCCGTGA 714 0.5056 MDTNCGPLVKTQAKMQYAENEMLGLRKGPWTLDEDTILLNYITTHGEGHWNSLARSAGLRRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLRCDVNSKEFRDTLRYVWMPRLLERIQPASQILQPQIKLDPGPTQIQGFHGLDSVTPAGSFSDSSSVELHSDCSGSGLDPWEEGNGGGEWLESLWNELEIKYSSLP* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1325 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Vra8g1325 237 Gene3D - 84 125 - -
Vra8g1325 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Vra8g1325 237 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Vra8g1325 237 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 230 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vra8g1325 237 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Vra8g1325 237 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Vra8g1325 237 SMART sant 79 127 IPR001005 -
Vra8g1325 237 SMART sant 26 76 IPR001005 -
Vra8g1325 237 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Vra8g1325 237 PANTHER MYB TRANSCRIPTION FACTOR 3 230 - -
Vra8g1325 237 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Vra8g1325 237 CDD SANT 84 123 IPR001005 -
Vra8g1325 237 Gene3D - 27 79 - -
Vra8g1325 237 CDD SANT 29 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1325 Vra-Chr8 29292417 29293580 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1325 3 165 MYB Transcription Factor Family AT1G48000 65.854 4.58e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra8g1325 Myb_DNA-binding 8.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1325 K09422 - gmx:778065 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0793 3 8111659 8114214 Vra8g1325 8 29292417 29293580 PCT