Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1324 ATGTCATATCTCTCCCTATATAAATCACCCTCTCAATGGAACCACCTAAGATATTTTTCAACAACCACCTCGTATTCCAAACCAAACATGACAACCTTATCAGATACTCAATTATCTGCTACATATGGAACTCAAGAAGAATTCGCAATTAAGAAAGGATCATGGACTGAGGAAGAAGATTCTCTTCTCATCAACTATGTCAACCTCCACGGCGAAGGCCACTGGAATTCCCTCGCTCGCTCTGCTGGTCTAAAGCGAACTGGCAAAAGCTGCAGACTAAGATGGTTGAACTACTTGCATCCAAATGTTCGACGTGGGAACATCACTCTTCAAGAACAGCTTTTGATTCTCGAACTCCATTCCCGCTGGGGCAACCGGTGGGCTAAAATAGCAGAACAGTTGCCTGGGAGAACAGATAATGAAATAAAGAACTATTGGAGGACGAGAGTGGTGAAGCAAGCCAAGCAACTCAAATGTGATGTGAACAGCAAGCAGTTTAGGGATGCTGTGCGTTTTGTTTGGATGCCACGCCTTATGGAGAGGATTCAGGCTTCTTCTGGGAATGCTTCTTCTTCCTACGGACATGGCCAGACCACATTGTGCAACACTCAAGCCCACGGTGAATCTAGTGGGGTCAATCCCATGATGTTTTCTGAAAGTTCAATGATTTCCTCGTACTCTTCAGGGGTTGATGTTCAGCCTCCTTCTCTCTCTGATGCGAGTACAACTTCATCTTGCAATTTAATGGGAGATGGTAGCTGTTCATCGGAAAGTGTTGAAAAGGGGTGGCAGCAGTGGGACTACTCTGATCTCCAAGCATTTGAACCGAACCATGGTTTTGGTGATGCAGACCTGTGGACCGATGAAAATATGTGGTTTTTGCAGCAGCATCTTGCTGATGATTTTTGA 909 0.4499 MSYLSLYKSPSQWNHLRYFSTTTSYSKPNMTTLSDTQLSATYGTQEEFAIKKGSWTEEEDSLLINYVNLHGEGHWNSLARSAGLKRTGKSCRLRWLNYLHPNVRRGNITLQEQLLILELHSRWGNRWAKIAEQLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDAVRFVWMPRLMERIQASSGNASSSYGHGQTTLCNTQAHGESSGVNPMMFSESSMISSYSSGVDVQPPSLSDASTTSSCNLMGDGSCSSESVEKGWQQWDYSDLQAFEPNHGFGDADLWTDENMWFLQQHLADDF* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1324 302 Gene3D - 49 105 - -
Vra8g1324 302 CDD SANT 54 99 IPR001005 -
Vra8g1324 302 ProSiteProfiles Myb-like domain profile. 47 99 IPR001005 -
Vra8g1324 302 Pfam Myb-like DNA-binding domain 105 148 IPR001005 -
Vra8g1324 302 Pfam Myb-like DNA-binding domain 52 99 IPR001005 -
Vra8g1324 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 103 IPR017930 -
Vra8g1324 302 SUPERFAMILY Homeodomain-like 50 146 IPR009057 -
Vra8g1324 302 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 38 296 - -
Vra8g1324 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 154 IPR017930 -
Vra8g1324 302 Gene3D - 109 150 - -
Vra8g1324 302 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 38 296 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vra8g1324 302 SMART sant 104 152 IPR001005 -
Vra8g1324 302 SMART sant 51 101 IPR001005 -
Vra8g1324 302 ProSiteProfiles Myb-like domain profile. 100 150 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1324 Vra-Chr8 29254143 29255581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1324 45 301 MYB Transcription Factor Family AT2G47190 48.855 3.86e-76 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra8g1324 Myb_DNA-binding 1.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1324 K09422 - gmx:778040 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0792 3 8098868 8100308 Vra8g1324 8 29254143 29255581 PCT