Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1323 ATGAAAAGAAAATATAATATTCTGCCTGGTCTTGAAATTTCGGTAACACTAGTTAGCATTTGCCGTGCCATGGTTTCCAAAACCCACTCCCAACTCATTATTCTGTTCCTGTTTCTTCTTTCATCGCTAAACATTACTTCCAGCTCATACACACATGATGCAGGGAATTTCGACAAGTGGGTATCTCGAAATGTGAAAAAGTACGAGAAGAGAAAGACCATTTTGAAAACCAAAGTGAAGGTGGCTGAGAGTAACAAAGCTATCATAACAGTAAGACAAGACGGTTCTGGTGATTTCAAAACCATATCAGAAGCTCTCAATAGCATTCCACCACGTAACACTAGGAGAGTTACAGTGTCCATTTCTCCGGGTGTATATAGGGAGAAGGTGATGATCCCAAGAACAATGGCTTTTGTTACACTCTCAGGAAACGCAGAGAATCCTCCAACCATTACTGGAAATGATACAGCATCTGCCTCAGGAAGAAATGGCACTCCCTTAGGAACCTTCCAGAGTGCAACTGTTGCTGTGGATGCTAGCTACTTTGTGGCCATCAACATCAAATTTGAGAACAGTGCTCCACATGAGATTGGAAGGAGAGGAGAACAAGGCGTGGCGCTTAGGATCTCAGGAACCAAAGCTGCTTTTTACAATTGCAGTTTCAGTGGAGCTCAAGATACTCTCTATGATCATAAAGGCCTTCATTTCTTCAACAACTGCTATATTCAAGGTTCTGTCGATTTCATCTTCGGTTCTGCCAGGTCCCTTTACCAGAATTGCTATCTAAATTCCACAAGTACGAAGGTGGCTTCCATCACTGCTCAAAAGCGTACAAATTCGTCACTGGAGAGTGGATTCTCCTTCAAAAACTGCACAGTAACTGGTAGTGGACATGTTTATCTAGGAAGAGCATGGGGTGATTATTCAAGAGTTGTTTTCTCTTACACCTACATGGACAACCTAGTACTCCCCAAAGGATGGAGTGATTGGGGTGACCAAAACCGTGATTCGAGGGTATATTATGGAGAATACATGTGTAGTGGGCCAGGAGCTAACTTGGCTGGAAGAGTGCCATGGGCACGAGTGCTTACAGATGAAGAGGCCAAGCCATTTATTGGGACCCAATTCATTGAAGGAGACACTTGGCTCATTAACACCAGCTGA 1164 0.4338 MKRKYNILPGLEISVTLVSICRAMVSKTHSQLIILFLFLLSSLNITSSSYTHDAGNFDKWVSRNVKKYEKRKTILKTKVKVAESNKAIITVRQDGSGDFKTISEALNSIPPRNTRRVTVSISPGVYREKVMIPRTMAFVTLSGNAENPPTITGNDTASASGRNGTPLGTFQSATVAVDASYFVAINIKFENSAPHEIGRRGEQGVALRISGTKAAFYNCSFSGAQDTLYDHKGLHFFNNCYIQGSVDFIFGSARSLYQNCYLNSTSTKVASITAQKRTNSSLESGFSFKNCTVTGSGHVYLGRAWGDYSRVVFSYTYMDNLVLPKGWSDWGDQNRDSRVYYGEYMCSGPGANLAGRVPWARVLTDEEAKPFIGTQFIEGDTWLINTS* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1323 387 Coils Coil 65 85 - -
Vra8g1323 387 ProSitePatterns Pectinesterase signature 2. 242 251 IPR033131 -
Vra8g1323 387 Pfam Pectinesterase 89 380 IPR000070 GO:0030599|GO:0042545
Vra8g1323 387 Gene3D - 82 387 IPR012334 -
Vra8g1323 387 PANTHER PECTINESTERASE 42 384 - -
Vra8g1323 387 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 42 384 - -
Vra8g1323 387 SUPERFAMILY Pectin lyase-like 86 383 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1323 Vra-Chr8 29239985 29245373 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1323 23 383 Carbohydrate Esterase AT5G47500 41.047 2.22e-96 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1323 K01051 - cit:102614801 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0472 3 5419424 5422684 Vra8g1323 8 29239985 29245373 PCT