Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1306 ATGTCGCTGGCCGCCGGTTCTATCTCTTCAACCGGTGGGTTTAAATGGTTGCTTGGGTTGTTATCTTGCACGGTGTGGTTTGTGGTTGAGTATGGTGAATGTGGTAGAACCCTGCAACAGCAAAAACCTTCTTTATCTCCAGCTGCTCTTCCACCTGTGGTTGATGGTGATCTGCCACTGCTGGCAAATGCTTTTGGGTTGAAGCATTTGCCTGCACCAATTCCATCACGTGCCAATTTCACCAAAGGAAGAGTACAGTTAGAACCTCCGGGTTCTGCTTTTAAGAATATTGCCCCTGTGCATCCCATTGCCGATGCAATTCCTGCTCTCGCTCAACCACCACTGTCCCCTTTTGTTTCCGATTGTTGCAGACATGACATGGTGTGGAAGCGAGGCAGTGAGATTTGCCAATGTGCTTATCCCATAAAGCTAGACTTGCTTCTTTTGAATGTCTCTCTAAACCCTGACTGGAATGTTGTTTTCCTCGATGACTTGGCCACCCAACTTGAGCTGCACACTACCCAAATTGAAATTATTAAATTTTACCTACTGAGCTTGTCCACATTGAATATATCGATGGATATCACTCCAAATAAAGGGATCAGTTTCTCCGCCAGTGAAGCCGCTAAAATAAATTCGTCGCTCTCATTGCATAAGGTTCAACTAGACAGCAGATATGTGGGCAATTACAGTGTCCTCAATATAACCTGGTTTAAAGCTCCACCTCCTTCTCAAGCTCCTACAATTGCTACATCACCTAAGAGAGCTCCTCACAGGAAAGCACCTCCAACCACATTATCGAGTACTTACAGGGGAAAGCATTCAAACTTGCCTCTTATTCTTGGAATTGTGACTGGCGTACTCTTCATTTCCATTGTATGTGTACTTACACTTTGCTTATGCACGATGCGGCCAAAAACAAAAACACCTCCCAGAGAAACTGAAAAGCCAAGGACTGAAAGCACAGTGCCAGCTGTTGGGTCTCTTCCCCATCCAACCAGTACACGCTTTATTGCTTATGAAGAACTGAAAGAAGCTACCAATAATTTTGAATTAGCAAGCGTACTCGGAGAAGGAGGTTTTGGTAGAGTTTTTAAAGGTGTCTTGAATGATGGAACTGCTGTTGCAATTAAGAGGCTTACTAGTGGAGGGCAACAGGGTGACAAAGAATTTTTGGTTGAGGTTGAGATGCTTAGTCGGCTGCATCATCGTAACCTTGTAAAACTAGTGGGATACTATAGTAATCGTGACGCATCACAAAATCTACTTTGCTACGAGCTTGTTCCGAATGGAAGTTTAGAGGCCTGGCTTCACGGTCCCCTGGGAATAAATTGCCCTTTGGATTGGGACACTAGAATGAAGATTGCCCTTGATGCTGCAAGAGGACTTGCATACCTGCACGAAGATTCACAGCCCTGTGTTATACACAGAGATTTCAAGGCATCCAACATATTACTTGAGAACAACTTTCATGCAAAAGTTGCAGATTTTGGTCTAGCTAAACAGGCACCTGAAGGCAGGGCCAATTATTTATCTACTCGAGTCATGGGCACATTTGGGTATGTAGCTCCTGAGTATGCTATGACTGGACATCTTCTTGTTAAAAGCGACGTTTATAGTTATGGGGTTGTCTTGCTGGAACTGTTGACCGGAAGGAAACCAGTGGATATGTCACAGCCAACTGGACAAGAGAACCTTGTTACTTGGGCAAGACCTATTCTTAGAGACAAGGATCGGTTGGAAGAACTTGCTGATCCAAGGCTTGGGGGAAGGTATCCAAAAGAAGATTTTGTACGTGTGTGCACTATTGCTGCAGCCTGTGTTGCTCCTGAAGCAAGCCAGCGACCCACAATGGGTGAAGTGGTACAGTCACTTAAAATGGTGCAGCGGATCACAGAAAGTCATGATCCTGTGTTAGCCACATCCATTACACGGCCCAACATGAGACAGTCTTCTACCACGTATGAGTCGGATGGGACTTCTTCAATGTTTTCTTCGGGTCCTTACTCTGGTCTAAGTGCCTTTGACCATGACAACATTTCGAGGACGGCTGTTTTCTCGGAAGATCTTCACGAAGGACGATGA 2085 0.4508 MSLAAGSISSTGGFKWLLGLLSCTVWFVVEYGECGRTLQQQKPSLSPAALPPVVDGDLPLLANAFGLKHLPAPIPSRANFTKGRVQLEPPGSAFKNIAPVHPIADAIPALAQPPLSPFVSDCCRHDMVWKRGSEICQCAYPIKLDLLLLNVSLNPDWNVVFLDDLATQLELHTTQIEIIKFYLLSLSTLNISMDITPNKGISFSASEAAKINSSLSLHKVQLDSRYVGNYSVLNITWFKAPPPSQAPTIATSPKRAPHRKAPPTTLSSTYRGKHSNLPLILGIVTGVLFISIVCVLTLCLCTMRPKTKTPPRETEKPRTESTVPAVGSLPHPTSTRFIAYEELKEATNNFELASVLGEGGFGRVFKGVLNDGTAVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSNRDASQNLLCYELVPNGSLEAWLHGPLGINCPLDWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPTGQENLVTWARPILRDKDRLEELADPRLGGRYPKEDFVRVCTIAAACVAPEASQRPTMGEVVQSLKMVQRITESHDPVLATSITRPNMRQSSTTYESDGTSSMFSSGPYSGLSAFDHDNISRTAVFSEDLHEGR* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1306 694 Gene3D Transferase(Phosphotransferase) domain 1 428 643 - -
Vra8g1306 694 SUPERFAMILY Protein kinase-like (PK-like) 326 627 IPR011009 -
Vra8g1306 694 Gene3D Phosphorylase Kinase; domain 1 332 427 - -
Vra8g1306 694 MobiDBLite consensus disorder prediction 246 268 - -
Vra8g1306 694 Pfam Protein tyrosine and serine/threonine kinase 351 625 IPR001245 GO:0004672|GO:0006468
Vra8g1306 694 PANTHER OS01G0750732 PROTEIN 84 694 - -
Vra8g1306 694 MobiDBLite consensus disorder prediction 306 327 - -
Vra8g1306 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Vra8g1306 694 ProSiteProfiles Protein kinase domain profile. 350 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g1306 694 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 84 694 - -
Vra8g1306 694 CDD STKc_IRAK 356 626 - -
Vra8g1306 694 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1306 Vra-Chr8 28954584 28965925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1306 20 694 Receptor kinase-like Gene Family AT4G02010 66.191 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vra8g1306 PK_Tyr_Ser-Thr 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1306 - - gmx:100792818 1191.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0779 3 7982886 7988713 Vra8g1306 8 28954584 28965925 PCT