Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1302 ATGACAGAGGAGTTCAACTTCGAATCTGTTCAGCCACCAAAGAAGTCTTCTTTTCAAGAAACTAAGGGACAAAAGGATAAACAAGTGCTGCCATCTTCTCTAGCATCACTAGAGCTCCTGAGCATTTATGGAAGCAGGTTCAATAAGCTAGGGACGCAAAACATCAGGCGTAGTGTTGAAACTTGCTTTAGTCCTCAGAAGTTATCAACTGAAGAAATAATAAGATTGGCCGGAGCAAGGTATCTTCAACACTCTACACAGTGGCATCATGATATTTGCATCCCCGTGCACCCTTATGGAATGAGCCTTGAGGGTTTATCGGAAGAAGAAAATAGAGGCGTGGAGCACGCTCAGTTTCTTCTGGCAGCTGCTGAGAGGGTAGGGTGCCAGCAATTTGAACGAGCCAGCATGCTACTTTCCCATTTGCTGTGGAACTCCTCAGGTGGTGGTGGAAGCCCCGTTCAGAGAGTTGCCTTTCATTTCTCTCAAGCACTTCTTGAAAGAATCAAAAGAAAAACGAGAGGAAAAGTGACATTGAACAAGTGCAAAAAAAACGAGGAAAGGGAAATGATCGAGAAGCTAATATTGGATACTAACATGGCTATTACGTGCCATAATAAAATTCCTTTCAATCAAGTAATGCAGTTTGCTGGGGTGCAGGTAATTGTGGAACATGTGGCATTTCAAACCAGAATACATCTCATAAACCTTGATATTGGGTTTGGGGTGGAATGCACAGCTTTGATGCAAGCATTGGCTGAGAGGCATGAAAGGCAAGTTGAGCTTCTGAAGATAACCGCCATTGGACTTCAAGGTATGACCAGACTGGAAGAAACAGGGGAAAGGTTAGTGAGTTTTGCTGAATCCTTGAACTTGCCCTTTTTATATAAGATAGTGTTCGTCAGAAGCATCACAGAGATCAAGGCTGAGCAATTTGGAATTGAAGATAATGAAGCTGTCGCTGTTTATTGTCCTTATATGCTGAGGACTATGGTGTCGGATTTTGTCTCTTTGGAACACTTGATGCGGGTGATGGGAAAAATCAGACCAACTATAATGATAGTTCTTGAGGTTGAAGCAAAGCACAATTCACCCTCTTTTGTGAATCGATTCATTGAAGCATTTTTCTTCTATGCAGCATATTTTGACTGCATTGATACCTGCATGAAGCAGGATTACGAGTGCAGAATGCGACTTGAGGGAATATTATCAGAAGGGATACGGAACATTATTGCTATGGAAGATGGAGAAAGAATGGTTAGAGATGTAAAGATAGATGTTTGGAGAAGATTCTTTGCAAGGTATAGAATGGTGGAGACTACATTTAGCGATTCATCATTTTACCAAGCTAACTTGGTTACCAAAAAATTCGAGTGTGGGAATTTCTGCACTGTGGAAAGAAATGGGAAATGCCTAATAATTAGATGGAAAGGAACCACGATTCATTCTATCTCAGCTTGGAAGTTTCTTTAA 1473 0.4141 MTEEFNFESVQPPKKSSFQETKGQKDKQVLPSSLASLELLSIYGSRFNKLGTQNIRRSVETCFSPQKLSTEEIIRLAGARYLQHSTQWHHDICIPVHPYGMSLEGLSEEENRGVEHAQFLLAAAERVGCQQFERASMLLSHLLWNSSGGGGSPVQRVAFHFSQALLERIKRKTRGKVTLNKCKKNEEREMIEKLILDTNMAITCHNKIPFNQVMQFAGVQVIVEHVAFQTRIHLINLDIGFGVECTALMQALAERHERQVELLKITAIGLQGMTRLEETGERLVSFAESLNLPFLYKIVFVRSITEIKAEQFGIEDNEAVAVYCPYMLRTMVSDFVSLEHLMRVMGKIRPTIMIVLEVEAKHNSPSFVNRFIEAFFFYAAYFDCIDTCMKQDYECRMRLEGILSEGIRNIIAMEDGERMVRDVKIDVWRRFFARYRMVETTFSDSSFYQANLVTKKFECGNFCTVERNGKCLIIRWKGTTIHSISAWKFL* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1302 490 Pfam GRAS domain family 118 488 IPR005202 -
Vra8g1302 490 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 18 488 IPR005202 -
Vra8g1302 490 MobiDBLite consensus disorder prediction 1 26 - -
Vra8g1302 490 ProSiteProfiles GRAS family profile. 107 488 IPR005202 -
Vra8g1302 490 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 18 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1302 Vra-Chr8 28926553 28928207 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1302 108 489 GRAS Transcription Factor Family AT1G66350 27.344 6.11e-41 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra8g1302 GRAS 2.6e-74 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1302 - - ccaj:109806982 739.184