Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1301 ATGGTGTCCAAACCTACGGACTCCGTTTCCAGACCTCGAAAACAACTTGGAGAGGCTGCAAATGATGCATTGGGAACTTTGTCCCTCAAGATAAATCAGTTGAAAAAGCAAATCCAGGCGGAGAGAATTGTATACATTAAAGAAAAAATTCAGAGCAATGAGAAGAAGCTACAATGTCATACCTCAGGAGTCCTATCGGCAATAACAACTAGGGGTTTTTCACAGACAGAGGAAAATAGGAAAACTCCAATTCTTTCTAGAATTGACCGTCCTTTATGTAAATTCAATGGTTTCTCTCCAGTCTCAGGAGACAAAGACCACAACAATCAAGATGTATTATCTGCTACAAGTATCAAAATACCATATATTGAAAGATTACCGCCATATACCTCTTGGATATTTCTGGACAGAAATCAGAGAATGGCTGATGATCAATCAGTTGTTGGAAGAAGACGAATCTACTATGATCAACATGGAAGTGAAGCACTGATATGTAGTGACAGTGAGGAAGAGTTAACAGAACATGAGGAAGAAAAACATGAATTTTCTGAGGCTGAAGACCGTGTTCTGTGGATGGCATTTGAGGAATATGGGTTAAATGAGGAGGTACTGAATATTGTTAGCGAATTTGTTGGGGGCACCACTTCAGAAATTCAGGAGAGGTACACAAGTATTAAGGAAAAGAACATTGGTAGGTTGGATCAGGATCAGCCTTCGGAAAACTCAGGAGATCTTGAATCTATTATTGGCATCTCTCCAGAGAAAACCCTGAGTGCTGCATTAGATTCTTTTGATAATCTTTTTTGTCGCCGGTGCCTGATTTTTGATTGTCGTCTTCATGGCTGTTCTCAACCTTTAGTATATCCTAGTGAAAAACAGACAGTATGGTCTGATCCTGAAGGTGACAAGAAACCATGCAGTGATCAGTGTTACCTTCAGTTAAATGAAGTCAAAGTTGTGTCAGAAGATGCAACTTCTGGGTCTGATCAAAATAAGAGAACTACAACTATGGAAGAGGCAGATGGGATATCGGCACCCTCCACTATAGAGGAACCTGGTAATCAGAGTACATCACCTTTTCCAACAGAAGTTGATTGTCATAGATCTCTCAATTTAAATGTTCCTATCTCAGTAAGTGTGGAGAAACGGAAAGTCACAAATGTGTCAGACACAGCACTTTGTGACTCAACTCCCCCTCCTGATGGTTCTCAAAATTCTAATAAAAAACTGAAGACTATCTCAGATGATGTAATTACTGTAAATAGTGATTCTAGCAATAACCTTTTGGGTGCATGCGATGAAAGTAAACATACTATTACTTGTGCAATTTTGGACAAATCTGTTAAACATAATTCCAATAAATTAATAGACTCTTCTAGCACTTGCGATACGGATGAGCAGGACAAAAGTATTGGGGATGGACCCAAAGACCCTACAAATAAAACAGAATTTAAGAAATTGTCCAGTTCAATGGAAGGGAAAGTTGATGGGATGCCAGGCCTCTCAGATTGGAAACCTCTAGAGAAAGAATTATACTTGAAGGGAGTGGAGATGTTTGGAAGAAATAGCTGCCTCATAGCAAGGAACTTACTTTCTGGCTTAAAGACTTGCATGGAAATAGCTACTTACATGCATGCTGGAGGAGTGTCAATGCCCCACGGATCTATCATTGCACCTAGTTCAATCATGGATGACAAGGGAAAATTTGATGCAGAGTACACAGACCAGGAGATGCCATCTAGGTCACGATTGCTGAGGAAAAGGGGCAAAACTAGGAAGTTTAAATATTCTTGGAAGTCTACTGGCCACCCATCAATATGGAAAAGAATTGCTGATGGGAAAAACCAATCTTGCAAGCAGTATACACCATGTGGATGTCAGTCAATGTGTGGAAAGGAATGTACTTGTGTTAATGGTGGAACATGCTGTGAAAAGTATTGCGGTTGTTCAAAAAGCTGCAAAAATCGATTCAGAGGATGCCATTGTGCCAAGAGTCAGTGCAGAAGTCGACAATGTCCGTGTTTTGCTGCAGGACGGGAATGTGACCCAGATGTTTGTCGGAATTGCTGGGTTAGTTGTGGTGATGGTTCATTAGGGGAGCCACCCCGGCGTGGAGAAGGTCAATGTGGAAATATGAGGCTTCTTTTAAGGCAACAACAGAGAATTCTGTTGGCAAAGTCTGATGTTGCAGGATGGGGAGCTTTCTTGAAGAACCCTGTTAACAAAAATGATTATCTAGGAGAGTACACAGGAGAACTGATCTCCCACCGAGAAGCCGATAAGCGTGGGAAAATATATGACCGTGCCAACTCTTCTTTCCTTTTTGACTTGAATGATCAGTACGTTCTTGATGCTTATCGCAAAGGAGACAAGTTAAAATTTGCAAACCACTCTTCAAACCCCAACTGCTACGCAAAGGTGATGCTGGTTGCTGGAGATCACCGAGTAGGCATATTTGCCAAGGAACACATAGATGCTAGCGAGGAGCTCTTCTATGATTATCGCTATGGTCCAGATCAAGCACCGCCATGGGCACGTAAACCTGAGGGTTCCAAGAGCGACGAATCAACAGTTTGTCAAGGCAGAGCAAAGAAACACCAGTCTCATTGA 2610 0.4149 MVSKPTDSVSRPRKQLGEAANDALGTLSLKINQLKKQIQAERIVYIKEKIQSNEKKLQCHTSGVLSAITTRGFSQTEENRKTPILSRIDRPLCKFNGFSPVSGDKDHNNQDVLSATSIKIPYIERLPPYTSWIFLDRNQRMADDQSVVGRRRIYYDQHGSEALICSDSEEELTEHEEEKHEFSEAEDRVLWMAFEEYGLNEEVLNIVSEFVGGTTSEIQERYTSIKEKNIGRLDQDQPSENSGDLESIIGISPEKTLSAALDSFDNLFCRRCLIFDCRLHGCSQPLVYPSEKQTVWSDPEGDKKPCSDQCYLQLNEVKVVSEDATSGSDQNKRTTTMEEADGISAPSTIEEPGNQSTSPFPTEVDCHRSLNLNVPISVSVEKRKVTNVSDTALCDSTPPPDGSQNSNKKLKTISDDVITVNSDSSNNLLGACDESKHTITCAILDKSVKHNSNKLIDSSSTCDTDEQDKSIGDGPKDPTNKTEFKKLSSSMEGKVDGMPGLSDWKPLEKELYLKGVEMFGRNSCLIARNLLSGLKTCMEIATYMHAGGVSMPHGSIIAPSSIMDDKGKFDAEYTDQEMPSRSRLLRKRGKTRKFKYSWKSTGHPSIWKRIADGKNQSCKQYTPCGCQSMCGKECTCVNGGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEPPRRGEGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNPVNKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIFAKEHIDASEELFYDYRYGPDQAPPWARKPEGSKSDESTVCQGRAKKHQSH* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1301 869 Pfam SET domain 731 834 IPR001214 GO:0005515
Vra8g1301 869 MobiDBLite consensus disorder prediction 322 361 - -
Vra8g1301 869 MobiDBLite consensus disorder prediction 848 862 - -
Vra8g1301 869 Pfam CXC domain 659 690 IPR041355 -
Vra8g1301 869 SMART CXC_2 655 692 IPR033467 -
Vra8g1301 869 ProSiteProfiles SET domain profile. 720 835 IPR001214 GO:0005515
Vra8g1301 869 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 15 867 IPR045318 GO:0006338|GO:0018024
Vra8g1301 869 MobiDBLite consensus disorder prediction 390 409 - -
Vra8g1301 869 MobiDBLite consensus disorder prediction 455 500 - -
Vra8g1301 869 ProSiteProfiles CXC domain profile. 607 706 IPR026489 -
Vra8g1301 869 MobiDBLite consensus disorder prediction 461 490 - -
Vra8g1301 869 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 15 867 - -
Vra8g1301 869 CDD SET_EZH 720 836 - -
Vra8g1301 869 MobiDBLite consensus disorder prediction 841 869 - -
Vra8g1301 869 Gene3D SET domain 621 837 IPR046341 -
Vra8g1301 869 Coils Coil 165 185 - -
Vra8g1301 869 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 869 IPR025778 GO:0031519
Vra8g1301 869 SUPERFAMILY SET domain 621 838 IPR046341 -
Vra8g1301 869 SMART set_7 720 841 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1301 Vra-Chr8 28913200 28925044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1301 709 863 C2H2 Transcription Factor Family AT2G23740 25.000 3.18e-09 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vra8g1301 SET 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1301 - K11430 pvu:PHAVU_007G213900g 1623.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1301 8 28913200 28925044 Vra8g1301 8 28913200 28925044 ECH
Vra3g0773 3 7950121 7956008 Vra8g1301 8 28913200 28925044 PCT