Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1294 ATGGCTTCGATTCAACGTCCTGCGAGTTCAGGATCGTCGGAGGGAGGAGATCCGGCCGTAGACGAGAGGAAGAGGAAGCGGATGGAGTCGAACCGCGAATCGGCGAGGAGATCGCGGATGCGGAAGCAGAAGCAGCTGGAAAACCTAACCGAGGAAGCGAGCCGATTGCAAAACGAGAACGCACGTCTGGCGCAGAGCATAAAGGCGAAGGAGGAAGCGTACGTTGAGATGGAAGCCGCCAACGACATCCTCAAAGCTCAGACAATGGAACTCGCCGATCGTTTACGGTTTCTGAATTCAATTCTCGAGATCGCCGAAGACGTCGGCGACCTCTCCGTCGAGATCCCGCAGATTCCGGATCTTTTCTTCAATCCTTGGCAGATCCCCCACCCTATGATGGCGTCGCCGGACATGTTCCTCCATGGAACTGAAGGACTGTTTGCATCATAA 450 0.5511 MASIQRPASSGSSEGGDPAVDERKRKRMESNRESARRSRMRKQKQLENLTEEASRLQNENARLAQSIKAKEEAYVEMEAANDILKAQTMELADRLRFLNSILEIAEDVGDLSVEIPQIPDLFFNPWQIPHPMMASPDMFLHGTEGLFAS* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1294 149 Coils Coil 25 87 - -
Vra8g1294 149 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 26 41 IPR004827 GO:0003700|GO:0006355
Vra8g1294 149 PANTHER BZIP TRANSCRIPTION FACTOR 53 1 138 - -
Vra8g1294 149 SUPERFAMILY Leucine zipper domain 23 77 IPR046347 GO:0003700|GO:0006355
Vra8g1294 149 SMART brlzneu 19 83 IPR004827 GO:0003700|GO:0006355
Vra8g1294 149 MobiDBLite consensus disorder prediction 1 57 - -
Vra8g1294 149 CDD bZIP_plant_GBF1 24 74 IPR045314 GO:0003700|GO:0006355
Vra8g1294 149 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 138 - -
Vra8g1294 149 Gene3D - 21 75 - -
Vra8g1294 149 MobiDBLite consensus disorder prediction 17 49 - -
Vra8g1294 149 Pfam bZIP transcription factor 23 79 IPR004827 GO:0003700|GO:0006355
Vra8g1294 149 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 21 68 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1294 Vra-Chr8 28860359 28861556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1294 1 139 bZIP Transcription Factor Family AT3G62420 50.685 1.27e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra8g1294 bZIP_1 4.4e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1294 K25786 - gmx:778189 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1294 8 28860359 28861556 Vra8g1294 8 28860359 28861556 ECH
Vra3g0768 3 7927174 7928408 Vra8g1294 8 28860359 28861556 PCT