Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1291 ATGGCCTTGAGGCCTTCATCTTTCGTCATCCTACTGGCATATGGTGCTTTGTTAATTCTGATTTTTGTGACACCATGCTGGTATGTCATAATCCTACGTATGGAAAAACATGTGAAATTGTCGAACTCAAAAAACAGTGTCTCGCAATTGCAATCAGAAATTGAACAGTTAGGTGAAGTGTTACGACCAATGAAATCATCATCAACCAACATGGCAAGATTTTTAAGTTCAAGCCTTCATGATATTACCAATGTCTCATTCTCTGATATAAAGAGCAAGGTGGCTCCGTTTCTGTTTGCAGCATTTGAGACAATTCCATACTTGGCCGAAATCTCATACATAGGTGTGGAAGGTCTCTTTTTCTCGTATTACACTCATAATCATCAAGTTCTTGCTATGTACTGCAACTCATCATCAACTTCTGTTGCCTCCAACAAAATCTTCATTCAACCTGTGAACCCTGAAACTGGAGAGCTTCATGGTGAACCCAAAAACATGCTATCTAACCCCTTTATCAATGCAAGTTGGATTGGTGAAGCACTTAATGTATCAACTGGGTTTTCCTCATTCAGAACCAAATGGGTCAATTCTGATCTTTTGTTCCTCACTTCAGCCAGAATCATCACAAGAGGACTCATCTCTCTTGGCTTTTCTGCAACGCCAATAACTCATTCTGTCACTCGCATTGACCAACAACATGGCACAAGCTCCTATTTAGCTACCAAAGATGGACAAGTTGTTGTGCCTGGGATTCAACTCACCCATTTCCTCATTTCTAATGATACAGTTTCGTTTCAATCACTCAATGCAAATACTACTAATGGGGTCACTGTCTCATGCAGGGATGAAACTGCTGCTTCTAGTTTCAATATTAGAGATATTGCATATTCAATTCACTGCTACACCATCGATATAATGGGAATCGAATCGGTGTATGTGTTGGCTGTCCCAAAAGAAGGATATGCAATCATTGATGGGAATTACAAAGAAAAGGGATTGATAGTGTTTGTGGCAACAATGGTCACTATATTTATAGCTTTCTTCAGTTTCCTATACGTAAACTGCAGAGCCTTTAGGCGAGAAATGCATTTGTGTGCCTCACTGATCAAACAGTGTGAAGCCACCCAACAAGCTGAGAAAAAGAATATGAACAAGAGCACCGCTTTTGCGAGTGCCAGCCATGATGTTCGGGCTTCTCTCGCAGGAATCACAGGTTTGATAGAGATATCTTCAGAGTTGGTAGACCCGGGTTCCGAATTGGAGACCAATCTCAAACAAATGAATGGTTGTACCCAAGACTTACTAGGACTGTTGAATTCTATACTAGACACAAGCAAAATTGAGGCAGGAAAAATGCAACTGGAAGAAGAGGAGTTTGATGTGTTCAATCTCTTAGAAGATGTAGTTGACTTTTACCATCCTGTGGCTGCGAAGAAAGGTGTAGATCTGGTGTTGGACCCTTGTGACGGTTCTGTAGTGGGATATTCACGCGTGAAAGGTGATAGGGGCAAACTAAAACAAGTTTTGGGAAATTTACTGAGCAATGCTGTTAAATTTACTGATGAGGGACACATAGCGGTACGCGCATGGACTCGGAAGCCAAAACTACTGCAGAACTCCTCCACAGTCACTTTTAACCAGTTTGGTTTCAAGCAATATTTATCATGCTTATTTCGTAACAAAACTCAACCACGTAGTGACGTCGAATCCACGCGTTCAATCCAAGAAGATCCTCATTCTATGGATTTTATATTTGAAGTGGATGACACAGGAAAAGGAATTCCTAAAGAGAATTACAAGTCTGTTTTTGAGAATTACGTCCAAATCAAAGATACTTCTCTTGGCCAAGGGGGAACTGGCTTGGGACTCGGGATTGTGCAGTCGCTGGTGCGTTTGATGCATGGAGATATTGAAATTGTGGAGAAGGATACGGGTGAAAGAGGGACATGCTTCAAGTTCAATGTGGTTCTCAGTGTATGTGAGAATGAGGCAGTGTCAGATGGTGTTGGTGGTGGATCAGGAGACAGAATAATAGAATGTGAGGAGGAGCAGCAGACTATGCAGGCTTCGTGTTCTGGTTCTTCTAGAATTTGTGCCATGAGTCCTAAGTTACGAATATGCAGCTCTAGTCCAAAGCCTGAGGCTTCCCTTGTGGTTCTTTTGATTGTTGACCAAGAGCGACAAAGGACTTCACAAAGGTTCATGGAGAGGTTAGGGATCAAAGTGAAAGTTGTGAATACAGGAAAAGGTTTGTTTAATACTCTGAGGAAGATCAAGCTGAAGGCTAAGCATTCCAGTGGCCAAAATTCTCCAGCTTCTTCGGATTTGAGTTATTGGTCTACACCTCATAGTTCTCTCGACATAGCCACAAGAGTTTCTTTGAGTTCTATGGAAGGAACTGAGCACATGCCTTTAGTTTTCAAGAAAACTGATGTGGGAGCTTCTCCCGGTTTCATCCTTGTTGTGATTGATGCAAATGCAGGACCATTTTCTGAGCTTTACACGATTGTGTCTAACTTCAAGAAAGAGCTTCGCAACCCGTGTAAGGTTGTGTGGTTGGATAAACCCTTTATGCGTAGAATCAACTTGAAGGCCCTTAATCAAGATGACATCGTCACATCCAAACCATTTCATGGTACTCGTTTGTTCCAAACCATAAAGCTCCTTCCTGAATTTGGTGGTTCTTGGCAAAGCAATTGTAGTAGAGCTAAGAGGGAAATGGGTAATGAGAAGGTTGATGATGGAGAAACACAACAAGAGATTGGAAAGTCATCAGGGTCTGAGAAAGCCTTGAGGGGTAAGAAGTTTTTGGTTGCTGATGACTCTGCAATTTTGCGCAATATAGCTTCTGCTACTCTGATTTCTCTTGGTGCAACCGTGGAGCAATGTGAGAATGGTGAACAGGCTGTGAGGTTAGTTGATGAGGGTCTAGCTCGGGAATATCCTCATCCTCCTTACGATTACATCTTAATGGATTGTCAGATGCCAATAATGGGCGGTCTTGATGCAACAAAGTGGATACGAAAGATAGAGAAAGCTTATGGTGTTCGCATTCCTATCATTGCATTGACTGCTGCAACAGAAAGAATAACGATAGAGAGTGGAATGGACTATCATATGGATAAACCCATTAACAGAGAGGATTTACTTAAAGCCATCACATATATAAATGGTAAAGTCTGA 3183 0.4169 MALRPSSFVILLAYGALLILIFVTPCWYVIILRMEKHVKLSNSKNSVSQLQSEIEQLGEVLRPMKSSSTNMARFLSSSLHDITNVSFSDIKSKVAPFLFAAFETIPYLAEISYIGVEGLFFSYYTHNHQVLAMYCNSSSTSVASNKIFIQPVNPETGELHGEPKNMLSNPFINASWIGEALNVSTGFSSFRTKWVNSDLLFLTSARIITRGLISLGFSATPITHSVTRIDQQHGTSSYLATKDGQVVVPGIQLTHFLISNDTVSFQSLNANTTNGVTVSCRDETAASSFNIRDIAYSIHCYTIDIMGIESVYVLAVPKEGYAIIDGNYKEKGLIVFVATMVTIFIAFFSFLYVNCRAFRREMHLCASLIKQCEATQQAEKKNMNKSTAFASASHDVRASLAGITGLIEISSELVDPGSELETNLKQMNGCTQDLLGLLNSILDTSKIEAGKMQLEEEEFDVFNLLEDVVDFYHPVAAKKGVDLVLDPCDGSVVGYSRVKGDRGKLKQVLGNLLSNAVKFTDEGHIAVRAWTRKPKLLQNSSTVTFNQFGFKQYLSCLFRNKTQPRSDVESTRSIQEDPHSMDFIFEVDDTGKGIPKENYKSVFENYVQIKDTSLGQGGTGLGLGIVQSLVRLMHGDIEIVEKDTGERGTCFKFNVVLSVCENEAVSDGVGGGSGDRIIECEEEQQTMQASCSGSSRICAMSPKLRICSSSPKPEASLVVLLIVDQERQRTSQRFMERLGIKVKVVNTGKGLFNTLRKIKLKAKHSSGQNSPASSDLSYWSTPHSSLDIATRVSLSSMEGTEHMPLVFKKTDVGASPGFILVVIDANAGPFSELYTIVSNFKKELRNPCKVVWLDKPFMRRINLKALNQDDIVTSKPFHGTRLFQTIKLLPEFGGSWQSNCSRAKREMGNEKVDDGETQQEIGKSSGSEKALRGKKFLVADDSAILRNIASATLISLGATVEQCENGEQAVRLVDEGLAREYPHPPYDYILMDCQMPIMGGLDATKWIRKIEKAYGVRIPIIALTAATERITIESGMDYHMDKPINREDLLKAITYINGKV* 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1291 1060 MobiDBLite consensus disorder prediction 907 927 - -
Vra8g1291 1060 SMART REC_2 934 1053 IPR001789 GO:0000160
Vra8g1291 1060 PANTHER TWO-COMPONENT HISTIDINE KINASE 35 1054 - -
Vra8g1291 1060 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 439 654 IPR036890 -
Vra8g1291 1060 SUPERFAMILY CheY-like 931 1054 IPR011006 -
Vra8g1291 1060 SMART HisKA_10 384 450 IPR003661 GO:0000155|GO:0007165
Vra8g1291 1060 Gene3D - 371 451 - -
Vra8g1291 1060 SMART HKATPase_4 500 659 IPR003594 -
Vra8g1291 1060 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 373 452 IPR036097 GO:0000155|GO:0007165
Vra8g1291 1060 Coils Coil 40 60 - -
Vra8g1291 1060 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 500 657 IPR003594 -
Vra8g1291 1060 Pfam Response regulator receiver domain 937 1053 IPR001789 GO:0000160
Vra8g1291 1060 Gene3D - 912 1057 - -
Vra8g1291 1060 Gene3D - 452 664 IPR036890 -
Vra8g1291 1060 PRINTS Bacterial sensor protein C-terminal signature 583 597 IPR004358 GO:0016310|GO:0016772
Vra8g1291 1060 PRINTS Bacterial sensor protein C-terminal signature 601 611 IPR004358 GO:0016310|GO:0016772
Vra8g1291 1060 PRINTS Bacterial sensor protein C-terminal signature 617 635 IPR004358 GO:0016310|GO:0016772
Vra8g1291 1060 CDD HisKA 382 446 IPR003661 GO:0000155|GO:0007165
Vra8g1291 1060 PANTHER HISTIDINE KINASE CKI1-LIKE 35 1054 - -
Vra8g1291 1060 CDD REC_hyHK_CKI1_RcsC-like 936 1053 - -
Vra8g1291 1060 ProSiteProfiles Histidine kinase domain profile. 391 659 IPR005467 -
Vra8g1291 1060 ProSiteProfiles Response regulatory domain profile. 935 1057 IPR001789 GO:0000160
Vra8g1291 1060 Pfam His Kinase A (phospho-acceptor) domain 385 450 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1291 Vra-Chr8 28809958 28814950 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1291 1 1046 Histidine Kinase Gene Family AT2G47430 38.693 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra8g1291 HATPase_c 8.7e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1291 - - var:108325233 1657.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1291 8 28809958 28814950 Vra8g1291 8 28809958 28814950 ECH