Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1290 ATGGAGGTCTCTGTGATTGCAAGAAACATGGAAGAAGTTGTGTTGTTGGTTGATGATTTGAAATCGGTTTCTGGGATTTCTCGCTGTAGAATATGCCATGAAGAAGAATTTGAGAGCAGCAAAACCTTGGAAGCTCCTTGTGGTTGTTCGGGGACAGTGAAGTTTGCTCACAGAGACTGCATTCAGACGTGGTGCAATGAGAAAGGAAACACAACTTGTGAAATATGTCTCCAGCAATACGAACCTGGATATACAGCGGTTCAGAAGAAATCGCAAATAGCTGATGCAGCAATGACCATTAGGGATAGCCTGCAAATTTCAATGACTGAACAAGAACCGTTAAACGCAAGAATAGTTGAGGGAAACAATTACTCTGAATGCACATATGCTGCAGATAGAAGCGCGGCCTGTTGTCGATCCCTGGCTTTAGCTTTTACTCTTATCTTGCTTGTAAGACATCTTTTTGCACTGCTTACGAATGGGATGGAAGATTATCCATTTACAATTCTTACGGTATTTTTACTGAGGGCCAGTGGAATTATTATACCGATGTACATAATCATTAAGACGATCGGAGCCATACATAATAACATCAAACGTTATCATCATCTTCATGAGGATTCTGATGATGAGTCCTCGATATCAGATGGAGAGGAGGAAGAAAATGAGAGAGCAGATGATGCAATTTTAAGACATTGA 699 0.4077 MEVSVIARNMEEVVLLVDDLKSVSGISRCRICHEEEFESSKTLEAPCGCSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGYTAVQKKSQIADAAMTIRDSLQISMTEQEPLNARIVEGNNYSECTYAADRSAACCRSLALAFTLILLVRHLFALLTNGMEDYPFTILTVFLLRASGIIIPMYIIIKTIGAIHNNIKRYHHLHEDSDDESSISDGEEEENERADDAILRH* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1290 232 MobiDBLite consensus disorder prediction 208 232 - -
Vra8g1290 232 ProSiteProfiles Zinc finger RING-type profile. 29 76 IPR001841 -
Vra8g1290 232 ProSiteProfiles Zinc finger RING-CH-type profile. 21 83 IPR011016 GO:0008270
Vra8g1290 232 Pfam Protein of unknown function (DUF3675) 82 191 IPR022143 -
Vra8g1290 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 87 IPR013083 -
Vra8g1290 232 Pfam RING-variant domain 29 76 IPR011016 GO:0008270
Vra8g1290 232 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 6 231 - -
Vra8g1290 232 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 6 231 IPR033275 -
Vra8g1290 232 CDD RING_CH-C4HC3_MARCH 29 76 - -
Vra8g1290 232 SUPERFAMILY RING/U-box 28 81 - -
Vra8g1290 232 SMART ringv_2 28 77 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1290 Vra-Chr8 28805505 28807674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1290 29 76 C3H Transcription Factor Family AT2G37950 44.898 6.17e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1290 - - gmx:100776501 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1290 8 28805505 28807674 Vra8g1290 8 28805505 28807674 ECH
Vra3g0764 3 7892910 7895096 Vra8g1290 8 28805505 28807674 PCT