Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1282 ATGATGGAAGCTAGTTACGTATCGCGAGTGTTTCGCGGTGTTCGTTTTGTTCTCCGTGGCTTCAATCCCGCCGCCGAAAGCCAGATCCGGTTTAAGCTTGAGGATGGCGGTGGACTTGACGCAGGGCAGTACGGTGGGAGTTGCACGCATGTCATTGTCGATAAGATTGCTTATGACGATCCTCTGTGTGTTGCCGCTAGAAAGGATCGGAAGACGCTCGTCACTGCTCTCTGGGTTGATCACAGTGCTGATATTGGAATGCCCGTTGATGCTTCTTCGGTTATGTATAGACCTCCTAAAGACTTGGATGGAATACCAGGTGCAAAAGATTTGATAATGTGCTTGACTGGTTATCTACGCCAGGATCGGGATGACATTATGACCATGGTCGGCCTGATGGGTGCAAAGTTTTCTAAACCATTGGTAGCAAACAAGGTTACTCATCTCATATGCTATAAATTTGAAGGAGAGAAGTATCTGCTTGCCAAGAGATTGGGCACAATAAAGCTAGTCAATCATCGTTGGTTGGAAGATTGCTTGAAGGAATGGGTGCTTCTTCCTGAAGACAGATATAGCAAGAGTGGTTACGAACTAGAAATGACGGAGGAAGAGGCCAAGGATTCTGAGGAAGAAGGTGAAGATTCTAAGCTGGGACAATCAGGTGGGAGAAATATACAACAAAGCCCCCTTGGTTCAAAATTTGGGCATGCTGGAACTCATGGATTGTTGAAATCAGTAAGAGAGGCATCGATCAACTTACCAGATTCTACTGGTCCACGGGTTTTGCCAAATGTCAATAATGGTGAAGACTCTTTAGCCATTCCAGGAAACAAGAGAAAATCTGATCAAGACTCTAGCTTTTATAATGTTGATGACTCAAGGATACGCTATCAGACTCCTGATATTTCTAAATTACCTGAAAAATATACAAACATCACTGAGTCTAAGAATGCTGATTTTCCAAAGGCACTTGGCTGCCAGGACCCTGGCAATACTGCAAATACAAACTCATCTGTTCAGCAGTCCGGTCTGCATGGTAGCTCGATGGAGTCTAAGAAGTTGATAAGTGAATTGACATCAACATCTGCAAGTGCAGCTGGAGTTGCACATTCAAATGAAAAGCTTGGGGCCACAAGTTATTCTAGAAAGAACCAAAGGGAATTTTCTGTCCCAAGGATATTAGACGGAAGCTCAGGCATAGAAGGCAACAAATGTGAAAACAGTAAGGTTGACGAGGCAATTGGGTTTATGAAATCTACCAGTTTTGAAATTTCTGGGAGAGGAAATGATTTTACTAAAGAGGATGAACCATTTAGTTTATTGTCTCAAAAGAGGATAAATGAAGCTTCTTTTACGAAATTAAAATCAAGAAAGGTGTCTTCTGATGCAAAAGTCTCCATCCAATCAGCAAATGGTAAACCTCAAGGATTAAAAGTGACATCTAAGGTTGATGGGCCACCCAAAGCTGGTTCTAACTCCAACTCACTGGCATTTGATGAGCATTTCTCAAGAAATGCCAGCCCAGACTCTGCACAGTGTGATAGTGTCTATCAGAATAGTCCACAAACGGCTATTCGGAGCTTAAGTGAGTCTAAAATTAGTGGCAAGCCTGATGTCACAAGTTCTGGAATGCGACAAGTTGGTGGTAATGAAGCCGGGCTGCATATCACCCAAAGTCTTGATTCTTCACCAAAGGGAAACAAAATCTCACATAATGTGGAATCCGGTGGTTTTACTAACTTGGATTTAAGGAATGAAGAATGTAATAAACTGGTTAGAAAATCACCCACAAAGAAGTCAGTTGTCAAGGGAATTTCGGGTTCTAAACCTAGAACAGGTGCCACTGCTACACATAAAAGGTCACTTTCCTTGAATAAAACTAACCTTGGTGAAGGTGTAGCTTTATGCAGCGAAAGCAAAGAGATTTGTGATGCGAAGATGCATCAGGGTTATCACCAAAACCGGGACGATAACAAAAAGATGGAACAAGACGCAGTAAGTAAAAATACAAATGATGCTTCTGACAGAGCTGAGTTCTTGACGGATGAAACAGAGGCTCCAGATGATAAATATGAATTTGAGTTTGGAATGGCACTGAATGAAGAATCAGTCCAGGCTTCGGAAAAGCCGAATAGGGCAACAAAAGAGAAGTCAGAAGCAATTTGCCCTGCAACAAAATGTGAAGAAGAAAATCCTCCTAAGAAAGGCACAAATAAAGCAGAAACACAGAAAATGTCTTCGCTGTTAGTAAAGAATCAAGCAAGAGAATGTGCTGCTGGTAAAGCCAATGCCACAGTTAGTAAATACGCAGGCGATGCTGGTGACAGAACTGAGACTTTGGATGATGAAACCGAAGATCCAGATGACAAACTTAAAAATGAGTTAGGAATGGCACCTGAAGAAGAATTGGTTCATCCTTCAAAAAAACGAGATAAATCTACTAAGGTTCACCCTTCAAGAAAACGAGATAAATCTCTAAAAGAGAAGCCAGAAACAATTTTTCCCGCACCAAATTGTGAAGAGGCAATGCCTCCTCAAGGTGTCACAAATAAAACCGAAAAACAGAAGCCATCTTCACTGTTAGGAAAGGTTCAAGTAAGGAAACGTCCTCCTGGTAAAGCCAAGGCCACAGTTGCCAAGGATTTATCGAAACCTAAAGTTGTAGTATCTACGGAGAAGATTCCTAATGAAACGAGGCATGAGGCAGAGATAGACACTGTGGAAGAAATGCCCTCTTCTGCTGATAAACATGACAAGTCGGCCTTAGCAAGAAATAAGTCAGAGACTTTAGCTGAAGAAGAGAAGGAGAATAGACCAATTGATTTAATCCAGGATCCTGTGAAGGGCAGAAGCAATGGCAATCCAACTAATAAATCTAATGTAAGGCGAACAGATATCAAGTCTACTAAAGTGGGGCCCATTCCATCTATATCAGAATCTAACACGAGAGTAAAAACTGAAGCCGCATATTTTATATTAAGCGGTCACAATCTGCAGAGAAAAGAGTTTCAGCAAGTACTCAAGCGCTTAAGTGGAAGGGTTTGCCGGCATTCTCACAATTGGTCATATCAGGCGACACACTTCATAGCTCCTGACCCATTACGCAGGACTGAGAAATTCTTTGCAGCGGCTGCATCAGGAAGGTGGATTCTGAAAACGGATTACCTAACTGCCAGCAGTCAGGAAGGAAGACTCTTGGCGGAGGAGCCGTATGAGTGGCACAGGAATGGTCTCAGTGAGGATGGAGCAATCAATATGGAGGCTCCGAGAAAGTGGCGGCTAGTTAAAGAAAAAACAGGTCATGGCGCCTTCTATGGAATGCGTATTGTTGTATACGGTGATTGCATAGCTCCGCCTTTGGATACTCTTAAACGTGTCATCAAAGCTGGCGATGGAACAATATTAGCCACTTCTCCTCCTTATACAAAATTCCTTGGTACCGAAGTCGACTATGCTGTAGTTAGCCCTGGCATGCCACATGTTGATATCTGGGTCCAAGAGTTCTTAAAACATGAGATACCTTGTGTTGTAGCGGACTATTTGGTTGATTATGTTTGCAAGCCCGGGTACTCACTCAAGAAGCATGTGTTATATGGCTCTCATGTTTGGGCAGAGAAATCGTTTGATAAACTTAAAAGCAGAGAAGAGATTGTTGCTCCTGAGGATTTCAGTAGTGATGATGATGATGATATAACTTGCCTAGTGTGTGGATCCCGCGACAGAGGAGATGTAATGCTGATTTGTGGTGATGAAAGTGGTTCTGTTGGGTGTGGAGTGGGTACCCACATCGATTGCTGCGATCCTCCACTAACACACGTCCCTGAGGACGACTGGTTTTGTTCAAAATGCAGTACCACCCGAAACTCCTCAAACAATCCCACTAAAAGGAAAAAGAATGTTTTATCATAA 3909 0.4272 MMEASYVSRVFRGVRFVLRGFNPAAESQIRFKLEDGGGLDAGQYGGSCTHVIVDKIAYDDPLCVAARKDRKTLVTALWVDHSADIGMPVDASSVMYRPPKDLDGIPGAKDLIMCLTGYLRQDRDDIMTMVGLMGAKFSKPLVANKVTHLICYKFEGEKYLLAKRLGTIKLVNHRWLEDCLKEWVLLPEDRYSKSGYELEMTEEEAKDSEEEGEDSKLGQSGGRNIQQSPLGSKFGHAGTHGLLKSVREASINLPDSTGPRVLPNVNNGEDSLAIPGNKRKSDQDSSFYNVDDSRIRYQTPDISKLPEKYTNITESKNADFPKALGCQDPGNTANTNSSVQQSGLHGSSMESKKLISELTSTSASAAGVAHSNEKLGATSYSRKNQREFSVPRILDGSSGIEGNKCENSKVDEAIGFMKSTSFEISGRGNDFTKEDEPFSLLSQKRINEASFTKLKSRKVSSDAKVSIQSANGKPQGLKVTSKVDGPPKAGSNSNSLAFDEHFSRNASPDSAQCDSVYQNSPQTAIRSLSESKISGKPDVTSSGMRQVGGNEAGLHITQSLDSSPKGNKISHNVESGGFTNLDLRNEECNKLVRKSPTKKSVVKGISGSKPRTGATATHKRSLSLNKTNLGEGVALCSESKEICDAKMHQGYHQNRDDNKKMEQDAVSKNTNDASDRAEFLTDETEAPDDKYEFEFGMALNEESVQASEKPNRATKEKSEAICPATKCEEENPPKKGTNKAETQKMSSLLVKNQARECAAGKANATVSKYAGDAGDRTETLDDETEDPDDKLKNELGMAPEEELVHPSKKRDKSTKVHPSRKRDKSLKEKPETIFPAPNCEEAMPPQGVTNKTEKQKPSSLLGKVQVRKRPPGKAKATVAKDLSKPKVVVSTEKIPNETRHEAEIDTVEEMPSSADKHDKSALARNKSETLAEEEKENRPIDLIQDPVKGRSNGNPTNKSNVRRTDIKSTKVGPIPSISESNTRVKTEAAYFILSGHNLQRKEFQQVLKRLSGRVCRHSHNWSYQATHFIAPDPLRRTEKFFAAAASGRWILKTDYLTASSQEGRLLAEEPYEWHRNGLSEDGAINMEAPRKWRLVKEKTGHGAFYGMRIVVYGDCIAPPLDTLKRVIKAGDGTILATSPPYTKFLGTEVDYAVVSPGMPHVDIWVQEFLKHEIPCVVADYLVDYVCKPGYSLKKHVLYGSHVWAEKSFDKLKSREEIVAPEDFSSDDDDDITCLVCGSRDRGDVMLICGDESGSVGCGVGTHIDCCDPPLTHVPEDDWFCSKCSTTRNSSNNPTKRKKNVLS* 1303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1282 1302 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1283 IPR044254 -
Vra8g1282 1302 MobiDBLite consensus disorder prediction 708 737 - -
Vra8g1282 1302 MobiDBLite consensus disorder prediction 328 351 - -
Vra8g1282 1302 MobiDBLite consensus disorder prediction 462 543 - -
Vra8g1282 1302 SMART PHD_3 1232 1284 IPR001965 -
Vra8g1282 1302 MobiDBLite consensus disorder prediction 789 809 - -
Vra8g1282 1302 MobiDBLite consensus disorder prediction 908 965 - -
Vra8g1282 1302 MobiDBLite consensus disorder prediction 254 291 - -
Vra8g1282 1302 MobiDBLite consensus disorder prediction 486 543 - -
Vra8g1282 1302 MobiDBLite consensus disorder prediction 653 673 - -
Vra8g1282 1302 Pfam BRCA1 C Terminus (BRCT) domain 992 1058 IPR001357 -
Vra8g1282 1302 MobiDBLite consensus disorder prediction 761 881 - -
Vra8g1282 1302 SMART BRCT_7 1101 1188 IPR001357 -
Vra8g1282 1302 SMART BRCT_7 8 86 IPR001357 -
Vra8g1282 1302 SMART BRCT_7 982 1063 IPR001357 -
Vra8g1282 1302 SMART BRCT_7 99 183 IPR001357 -
Vra8g1282 1302 ProSiteProfiles BRCT domain profile. 991 1073 IPR001357 -
Vra8g1282 1302 SUPERFAMILY FYVE/PHD zinc finger 1222 1288 IPR011011 -
Vra8g1282 1302 Pfam twin BRCT domain 111 175 IPR001357 -
Vra8g1282 1302 Gene3D BRCT domain 1100 1200 IPR036420 -
Vra8g1282 1302 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Vra8g1282 1302 MobiDBLite consensus disorder prediction 462 476 - -
Vra8g1282 1302 Gene3D BRCT domain 100 221 IPR036420 -
Vra8g1282 1302 Gene3D BRCT domain 2 95 IPR036420 -
Vra8g1282 1302 MobiDBLite consensus disorder prediction 197 232 - -
Vra8g1282 1302 MobiDBLite consensus disorder prediction 599 619 - -
Vra8g1282 1302 Gene3D BRCT domain 983 1099 IPR036420 -
Vra8g1282 1302 CDD BRCT_TopBP1_rpt7 990 1063 - -
Vra8g1282 1302 SUPERFAMILY BRCT domain 8 93 IPR036420 -
Vra8g1282 1302 SUPERFAMILY BRCT domain 106 192 IPR036420 -
Vra8g1282 1302 MobiDBLite consensus disorder prediction 702 748 - -
Vra8g1282 1302 SUPERFAMILY BRCT domain 992 1076 IPR036420 -
Vra8g1282 1302 ProSiteProfiles Zinc finger PHD-type profile. 1230 1286 IPR019787 -
Vra8g1282 1302 MobiDBLite consensus disorder prediction 908 943 - -
Vra8g1282 1302 MobiDBLite consensus disorder prediction 320 351 - -
Vra8g1282 1302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1219 1301 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1282 Vra-Chr8 28720687 28727186 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1282 129 235 Core DNA Replication Machinery Family AT4G02110 64.486 1.17e-35 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra8g1282 BRCT 3.5e-06 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1282 K10728 - gmx:100799144 1825.06