Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1276 ATGGGAAGAGCTCCTTGTTGTGAGAAAGTAGGCTTGAAGAAAGGAAGGTGGACATCAGAGGAAGATCAGATCTTGGCCAAATACATTCAGGCCAATGGAGAAGGTTCTTGGAGGTCGTTGCCTAAGAATGCAGGATTATTGAGGTGTGGCAAGAGTTGCAGACTGAGATGGATTAACTATTTGAGAGCTGACCTTAAAAGAGGAAACATTTCTGCTGAAGAGGAGAAGACGATCGTCAAGTTGCACGCTTCTTTGGGTAACAGGTGGTCTTTGATAGCAAGTCATTTGCCAGGAAGAACAGACAACGAGATTAAGAATTACTGGAATTCTCACTTGAGCAGGAAAATTTACTGTTTCCCAAAGATGGAGAACCAACAAAGTGCAGTTGCAGTTGCAGGGGCGATTGATACACCTAAAGTGGTGAGCATTCCTCCCAAGCGAAAAGGTGGCAGAACAAGCCGTTGGGCAATGAAGAAGAACAAAACCTATATCCAAAATGCCGACAGAATCAAAGAAAATTTGAATCAAGGAAATATTACTGTTAGCATAGTTCCAAATGCACCCAGTTCGTCGACAGAGAGCAATGGCATAAGGGAGTCTAAGGCGACGGAGGATAACGTGGTAGAAGAGTTTAGAGAAGGAAAGGTAGATGAAAAGTGTGAAAAGGAGATCTTAAAAGTGTGTGAAATTGAGGGCATTGATGAGGGGAGTGAGATGTTGGAAAGTTGCTTGGCGGAAACATGTGGGGTTTGGGACATAAGTGAGAAGAGAGAGAGCAATGATGTGGAAATGGTGCCTAATACTGATGCTAGTCCAAACAAAACATCGTCGTGTGATAGTAGCGTGAACGGTTATTCGTCTTCTTCTTCAGTGGCCCTGAGCTTGGATCAACACTGGGATTGGGAGAGCGTGATAGAGTTCAATAACGTTGTTGAGTCCCAATTCGATTCTCACGATTTTAGTCACAAAGATGAACTGCTGACGTGGCTGTTGGAGGATGACATTTGGGAAAGTCATGACAACAAATTGGAAGAGACAGATATAAATATACAAGACAACGTTCTTGATTGGCTTCTCTCTTGA 1083 0.4331 MGRAPCCEKVGLKKGRWTSEEDQILAKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISAEEEKTIVKLHASLGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYCFPKMENQQSAVAVAGAIDTPKVVSIPPKRKGGRTSRWAMKKNKTYIQNADRIKENLNQGNITVSIVPNAPSSSTESNGIRESKATEDNVVEEFREGKVDEKCEKEILKVCEIEGIDEGSEMLESCLAETCGVWDISEKRESNDVEMVPNTDASPNKTSSCDSSVNGYSSSSSVALSLDQHWDWESVIEFNNVVESQFDSHDFSHKDELLTWLLEDDIWESHDNKLEETDINIQDNVLDWLLS* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1276 360 SMART sant 13 63 IPR001005 -
Vra8g1276 360 SMART sant 66 114 IPR001005 -
Vra8g1276 360 CDD SANT 16 61 IPR001005 -
Vra8g1276 360 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra8g1276 360 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra8g1276 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vra8g1276 360 PANTHER MYB TRANSCRIPTION FACTOR 2 323 - -
Vra8g1276 360 Gene3D - 71 116 - -
Vra8g1276 360 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vra8g1276 360 CDD SANT 71 112 IPR001005 -
Vra8g1276 360 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vra8g1276 360 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra8g1276 360 MobiDBLite consensus disorder prediction 182 202 - -
Vra8g1276 360 MobiDBLite consensus disorder prediction 182 197 - -
Vra8g1276 360 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 323 - -
Vra8g1276 360 Gene3D - 11 67 - -
Vra8g1276 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1276 Vra-Chr8 28662649 28668030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1276 1 158 MYB Transcription Factor Family AT2G47460 72.393 1.11e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra8g1276 Myb_DNA-binding 7.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1276 K09422 - gmx:100793350 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1276 8 28662649 28668030 Vra8g1276 8 28662649 28668030 ECH
Vra3g0753 3 7789224 7792722 Vra8g1276 8 28662649 28668030 PCT