Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1267 ATGTTTAGTTCTCCTCTCACACACACAACGACCAAAAAAAATAAAATGGCAAAAGCTAATGCGAAGAACAAGTCGACCGTCGCTCTCCACCCTCCTTACTTCCAGATGATCGCCGACGCAATAACGTCGTTGAAGGAACGCACGGGTTCGAGTCAGCCGGCGATAGCCAAGTTCGTCGAGGACAAGCACAGCAAAGTGCTTCCTCCCAACTTCCGGAAACTTCTCTCCGTTCAGTTGAAAAGTTTGGTCAAATCGGAGAAGCTCTACAAGGTCAAGAACTCCTACAAACTTTCTTCTCCACACACTGAGAAACCCAAAACCGCTCCGAAAGAGAAGAAGCTGACTGAGAAGAAGAAGAGGCTGAGTCAGGTGAAGACGCCCGAAGCTCTGAAGAAGAAGAAAGCCCCCAGCGCGAAGAAATATGTGGCGGCGGCGGCAGCCTCTGGAGGAGGTAAAGTGAAACGTTTGAGTCAGGTGAAGACTCCCGAGGTCATGAAGAAGAAGCCCAATTTAACACCTGCCAAACGCAAGGGCACTCCCAAACCCTCCAGGCCCAACAGGAAAACTAGGAAATGA 576 0.5 MFSSPLTHTTTKKNKMAKANAKNKSTVALHPPYFQMIADAITSLKERTGSSQPAIAKFVEDKHSKVLPPNFRKLLSVQLKSLVKSEKLYKVKNSYKLSSPHTEKPKTAPKEKKLTEKKKRLSQVKTPEALKKKKAPSAKKYVAAAAASGGGKVKRLSQVKTPEVMKKKPNLTPAKRKGTPKPSRPNRKTRK* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1267 191 Pfam linker histone H1 and H5 family 30 97 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra8g1267 191 Gene3D - 22 122 IPR036388 -
Vra8g1267 191 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 29 99 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra8g1267 191 MobiDBLite consensus disorder prediction 1 25 - -
Vra8g1267 191 PANTHER HISTONE H1 11 188 - -
Vra8g1267 191 SMART h15plus2 27 94 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra8g1267 191 MobiDBLite consensus disorder prediction 1 16 - -
Vra8g1267 191 CDD H15 30 109 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra8g1267 191 PANTHER HISTONE H1 11 188 - -
Vra8g1267 191 MobiDBLite consensus disorder prediction 91 191 - -
Vra8g1267 191 MobiDBLite consensus disorder prediction 91 135 - -
Vra8g1267 191 PRINTS Histone H5 signature 16 37 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vra8g1267 191 PRINTS Histone H5 signature 43 60 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vra8g1267 191 PRINTS Histone H5 signature 121 135 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vra8g1267 191 PRINTS Histone H5 signature 175 191 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vra8g1267 191 SUPERFAMILY "Winged helix" DNA-binding domain 30 111 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1267 Vra-Chr8 28506687 28507739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1267 31 100 Single Myb Histone (SMH) Gene Family AT1G72740 38.571 4.28e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1267 K11275 - gmx:100306187 199.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1267 8 28506687 28507739 Vra8g1267 8 28506687 28507739 ECH