Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1261 ATGGCGGCATTGTCGTTTTCAGTGGCATCCGTTGTGGAAGATGTGCTTCAACAGCACGGTACTCGCCTCAAAGATCTTGATTTGGAATCTAGAAAAGCGGAAGAAGCTGCATTCAGAAGGTATGAAGCAGCAGGGTGGCTGAGGAAAATGGTTGGAGTTGTTGCAGCTAAGGATTTGCCAGCAGAGCCCTCTGAGGAAGAGTTTAGGCTTGGTCTGAGAAGTGGGATGATTCTCTGTAATGTCCTTAATAAGGTTCAACCTGGTGCTGTACCGAAGGTTGTGGAGAGTCCTCTTAGTTCTGCACTAATGCCTGATGGGGCACCCTTATCGGCATATCAGTATTTTGAAAACGTGAGGAACTTTCTGGTGGCTGTGCACGAAATTGGAATTCCTACCTTTGAGTCATCTGATCTTGAACAAGGAGGAAAATCAGCCAGGATTGTGAACAGTGTCTTAGCCCTTAAGTCCTATAGTGAATGGAAACAGACTGGGAGTAATGGTGTGTGGAAATTTGGTGGAACTGTCAAACCCACAATCTGTGCAAAATCTTTTGTGAGAAAAAACTCTGAGCCATTTACTAATTCTTTGTCGAGAAACTCGTCCATCAATGAAAAATCCACTAATGCTCTCACATCTGATATCGAGTCTAATAAAATGTCCAGGTCTCATTCTTTGAGTATGCTTGTTCGTGCAGTACTATTAGATAAGAAGCCTGAAGAAGTTCCACTGTTAGTCGAATCAGTCTTAAACAAGGTAGTAGAGGAGTTTGAGCATCGCGTTGCTAGCCAGGGAGAACAGACTAAACTTTTAAGAGGTGCTGCGTCCCAAGGCAATGGATCTGTATCAAAGTTTGTTGTGGCAGATAAAAAGATGGAAAACAATATTCCTTCAGTAACAAAGAAAGAAGGATTCCTCCATAAAACCCTTGTTGACGATGAGGAATCAAAAAGACAACTTTTGAAGCAGCAAGTGTTCTTTGATCAACAGCAAAAAGATATTCAAGAACTAAAGCATACAATTCAAACCACCAAAGCTGGTATGAAGTTCCTGCAAATTAAGTTTCATGAGGAGTTCTCCAATCTAGGCAAGCACGTTCATGGCTTAGCTCATGCTGCCTCTGGATACCATAGAGTACTTGAAGAAAATCGCAAACTATACAATCAAGTCCAGGATCTTAAGGGAAGTATTAGAGTGTACTGTCGGGTAAGACCCTTTTTATCAACACATCCAATTTATTCGAGCACAGTGGATAATATAGAAGATGGATCTATCACAATTAGTATTCCTTCAAAGAATGGGAAAGGGCGCAGATCCTTCAACTTCAACAAAGTATTTGGACCGGCTGCATCCCAAGCGGAGGTCTTCTCTGATATGCAGCCACTCATTAGGTCTGTTCTTGATGGTTACAATGTTTGCATATTTGCTTACGGTCAAACAGGATCGGGAAAAACTTACACAATGACTGGACCGAAAGAGATTACAGAGAAAAGCCAAGGTGTAAATTACAGGGCCCTAAGTGATTTATTTCTTACAGCAGATCAAAGAAGAGACACTTTTTGCTATGATGTGTCTGTTCAAATGATTGAGATTTACAATGAGCAAGTCAGAGATCTATTGGTTACCGATGGATCAAACAAAAGGTTGGAAATTCGTAGTAATTCTCATAGAGGGCTCAGTGTACCAGATGCATGCCTAGTTCCAGTATCATCAACAAGAGATGTTATTGAACTGATGAACCTGGGCCAAAGGAATCGTGCAGTTGGTGCCACAGCCCTTAATGACCGTAGTAGCAGATCACACAGTTGCTTGACTGTTCATGTTCAAGGAAGAGATTTAACATCAGGAACTATTCTACGTGGATGCATGCATCTGGTTGACTTGGCAGGAAGTGAGAGAGTTGACAAATCCGAGGCCACAGGAGACAGGTTGAAAGAGGCTCAGCATATTAACAAATCTCTTTCAGCTTTGGGTGATGTCATTGCTTCCCTTGCTCAAAGGAACCAACATGTTCCTTACAGAAATAGTAAGCTCACACAGCTACTCCAAGATTCACTTGGAGGACAGGCCAAAACACTTATGTTTGTTCACATCAGTCCAGAGGTCGATGCAGTTGGAGAAACAATTAGCACCTTAAAATTTGCAGAAAGAGTTGCTACTGTTGAACTTGGTGCTGCTCGAGTAAACAAGGATGGGGAAGATGTCAAAGAGCTCAAAGAACAGATAGCCAGCCTCAAAGCAGCATTGGCACGAAAGGACGGTGAATCTCAACATTCTTTGTCTGGAAGTTCTGAAAAATATAGGACATTGGCTAGTGAGTCATCGCCTTATCATGCAAACCAGAGGGGAATTGTGAGTGATCGCCTAGGATGCCGGCAACCAATGGTTGATGTCGGAAACATAGAGCTTCACAGTAATACCCCATTGAGACAAAAGAGTCAAAGCTATGATTTTGATGAGATGTCTACGAATTCACCACCCTGGCCACCAGTGAACAATCCTGGACAAAACTACCGGGAGGATGACAGAGAAACTGGTTCAGGAGAGTGGGTTGATAAAGTCATGGTAAACAAGCAAGATGCAAACAAAACTGACAACATCTTAGGCTGTTGGGAAGCAGACAGTGGAAACTTATCCGAGGTGTTTTATCAGAAGTATCTCCAAGATTCTTCTAAAATGTACTCAGATGGATCCTACAACATGTTCATGGGGCACAACCAATTTAAGATTGCTGGTTCAGATGACATGGATGATCTTGATGATACAACCACCGATTCCTCGGAGCCTGACTTGCTTTGGCAATTTAATAATTCCAAGCTTACAACCATAGCCAATGGTAATGGATCAAAGGCTAGGAGACCTGTCTCTAAGCCAACAAATAGCCCAATATTGAGCAAGAATAATTCTTCTCTTGGTCCTTCACCTTCACGAAAACAACCAAATGGCGTGTTACATCGAACAGGAAGACATCCAGCTCCAGTGGACATGAAACGCAAAACTGGTAGTAGAAAGTAA 3012 0.424 MAALSFSVASVVEDVLQQHGTRLKDLDLESRKAEEAAFRRYEAAGWLRKMVGVVAAKDLPAEPSEEEFRLGLRSGMILCNVLNKVQPGAVPKVVESPLSSALMPDGAPLSAYQYFENVRNFLVAVHEIGIPTFESSDLEQGGKSARIVNSVLALKSYSEWKQTGSNGVWKFGGTVKPTICAKSFVRKNSEPFTNSLSRNSSINEKSTNALTSDIESNKMSRSHSLSMLVRAVLLDKKPEEVPLLVESVLNKVVEEFEHRVASQGEQTKLLRGAASQGNGSVSKFVVADKKMENNIPSVTKKEGFLHKTLVDDEESKRQLLKQQVFFDQQQKDIQELKHTIQTTKAGMKFLQIKFHEEFSNLGKHVHGLAHAASGYHRVLEENRKLYNQVQDLKGSIRVYCRVRPFLSTHPIYSSTVDNIEDGSITISIPSKNGKGRRSFNFNKVFGPAASQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPKEITEKSQGVNYRALSDLFLTADQRRDTFCYDVSVQMIEIYNEQVRDLLVTDGSNKRLEIRSNSHRGLSVPDACLVPVSSTRDVIELMNLGQRNRAVGATALNDRSSRSHSCLTVHVQGRDLTSGTILRGCMHLVDLAGSERVDKSEATGDRLKEAQHINKSLSALGDVIASLAQRNQHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEVDAVGETISTLKFAERVATVELGAARVNKDGEDVKELKEQIASLKAALARKDGESQHSLSGSSEKYRTLASESSPYHANQRGIVSDRLGCRQPMVDVGNIELHSNTPLRQKSQSYDFDEMSTNSPPWPPVNNPGQNYREDDRETGSGEWVDKVMVNKQDANKTDNILGCWEADSGNLSEVFYQKYLQDSSKMYSDGSYNMFMGHNQFKIAGSDDMDDLDDTTTDSSEPDLLWQFNNSKLTTIANGNGSKARRPVSKPTNSPILSKNNSSLGPSPSRKQPNGVLHRTGRHPAPVDMKRKTGSRK* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1261 1003 PRINTS Kinesin heavy chain signature 468 489 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g1261 1003 PRINTS Kinesin heavy chain signature 590 607 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g1261 1003 PRINTS Kinesin heavy chain signature 621 639 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g1261 1003 PRINTS Kinesin heavy chain signature 670 691 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g1261 1003 ProSiteProfiles Calponin homology (CH) domain profile. 37 159 IPR001715 GO:0005515
Vra8g1261 1003 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 2 1000 - -
Vra8g1261 1003 MobiDBLite consensus disorder prediction 942 1003 - -
Vra8g1261 1003 MobiDBLite consensus disorder prediction 815 845 - -
Vra8g1261 1003 MobiDBLite consensus disorder prediction 755 780 - -
Vra8g1261 1003 Gene3D - 24 176 IPR036872 -
Vra8g1261 1003 Coils Coil 727 754 - -
Vra8g1261 1003 SMART kinesin_4 393 728 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g1261 1003 Coils Coil 16 36 - -
Vra8g1261 1003 MobiDBLite consensus disorder prediction 942 980 - -
Vra8g1261 1003 SUPERFAMILY Calponin-homology domain, CH-domain 40 170 IPR036872 -
Vra8g1261 1003 Pfam Kinesin motor domain 401 719 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g1261 1003 SMART ch_5 39 157 IPR001715 GO:0005515
Vra8g1261 1003 CDD KISc_C_terminal 393 722 - -
Vra8g1261 1003 MobiDBLite consensus disorder prediction 748 780 - -
Vra8g1261 1003 ProSiteProfiles Kinesin motor domain profile. 395 720 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra8g1261 1003 PANTHER KINESIN-LIKE PROTEIN KLP-3 2 1000 - -
Vra8g1261 1003 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 395 752 IPR027417 -
Vra8g1261 1003 Gene3D Kinesin motor domain 390 761 IPR036961 -
Vra8g1261 1003 Pfam Calponin homology (CH) domain 40 159 IPR001715 GO:0005515
Vra8g1261 1003 MobiDBLite consensus disorder prediction 989 1003 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1261 Vra-Chr8 28394139 28400208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1261 383 720 Calmodulin-binding Proteins AT5G65930 43.642 2.82e-77 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1261 K10406 - gmx:100801279 1761.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1261 8 28394139 28400208 Vra8g1261 8 28394139 28400208 ECH
Vra8g1261 8 28394139 28400208 Vra3g0904 3 9074214 9077655 ECH
Vra3g0740 3 7698025 7704016 Vra8g1261 8 28394139 28400208 PCT