Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1257 ATGTGTGGCGGTGCCATCATCGCTGACTTCATACCCCGCCGTGGCCGTTCTCTCGCCGCCTCCGAACTCTGGCCAAACTCCTTCGGAAAGGACGATGATTTCGGCTTCGGTTACTCCCAAGTCGCTAACCAACAACCTTCCACTGTCAAAACGGCTCAACCTCCCAAAGTTAGCGAGAAAGTTGACACTAAGCCAGTGAAAAGGCAGAGGAAGAATCTCTACAGAGGGATTCGGCAGCGCCCTTGGGGCAAATGGGCTGCGGAGATTCGCGATCCTAGAAAAGGGGTTCGTGTCTGGCTGGGTACCTTCAACACTGCGGAAGAAGCTGCAAGGGCCTATGATCGTGAAGCTCGAAAAATCCGCGGCAAAAAAGCTAAGGTGAATTTCCCTAACGAGGACGATGAATATTCCATTCAAGCTCGTAATCCAATTCCACCCCTTCCTTTCGCAACCCAAAAACCAACTCCGTATCAGCAACAGTACCGTTGTGATCTCAATAATGCCCCCACAGATCTCAACTTCGAGTTTGGTTATGACCTGAACCACACTGGGGCATTTTCATCCCACGTGGACTCTGTCAACGCTGAGTCGGTTGTCGCTTCCGGCGACGAAAATTCAGGGTTAGCGTCCGGTTCAGAGGGCGCTCATTCGACAAACGAGTTCATGGGGTGTAGTGAGAAAGTGAACGGTTATTTCAACGGCACGGTGATTGAGAAGGAGAAAGAGATAGAGGTGATTGAAGCTGAAGAGGAAAAGAACAAATTGCAGGAGCTTTCAGAGGAACTTATGGCTTATGAGAATTACATGAAGTTTTATCAGATTCCGTACTATGATGGACAATCTATGCCACCGAATAATGTTCAGGGATGGGACTGA 876 0.4943 MCGGAIIADFIPRRGRSLAASELWPNSFGKDDDFGFGYSQVANQQPSTVKTAQPPKVSEKVDTKPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDEYSIQARNPIPPLPFATQKPTPYQQQYRCDLNNAPTDLNFEFGYDLNHTGAFSSHVDSVNAESVVASGDENSGLASGSEGAHSTNEFMGCSEKVNGYFNGTVIEKEKEIEVIEAEEEKNKLQELSEELMAYENYMKFYQIPYYDGQSMPPNNVQGWD* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1257 291 PANTHER DNA-BINDING DOMAIN 1 274 IPR044808 GO:0003700|GO:0009873
Vra8g1257 291 Coils Coil 238 268 - -
Vra8g1257 291 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
Vra8g1257 291 CDD AP2 74 131 IPR001471 GO:0003700|GO:0006355
Vra8g1257 291 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Vra8g1257 291 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Vra8g1257 291 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Vra8g1257 291 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700|GO:0006355
Vra8g1257 291 PANTHER EREBP TRANSCRIPTION FACTOR 1 274 - -
Vra8g1257 291 Pfam AP2 domain 74 122 IPR001471 GO:0003700|GO:0006355
Vra8g1257 291 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1257 Vra-Chr8 28336480 28337927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1257 1 131 AP2-EREBP Transcription Factor Family AT3G16770 55.882 1.02e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra8g1257 AP2 8.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1257 K09286 - gmx:100780763 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1257 8 28336480 28337927 Vra8g1257 8 28336480 28337927 ECH