Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1251 ATGAACAACTTCATACTTGCATCCATTTTCACTGTCATTTCTGCATTACTCTTCTTAGCAACTCATTTCACTAACACCCCAACAAGAGCCACACAGAAACACCTCCATTTCCAAAACCACATACAAGTAGCTCAATCCACGTGCCAAGGAACACTCTACCCCGAACTATGTGTCTCAACCCTTGCCACATTCCCAGATCTTACTTCCAAATCTGTCCCACAAGTCATTTCTTCTGTGGTCAACCATACCATGTACGAGGTAAAATCATCCTTCTACAACTGCAGCAGCCTCAAAAAGAAGATCAGAAACCTCAACCCACTTGATCAGAGAGCCCTCGACGACTGTCTCAAACTGTTCCAAGACACCAACCTGGAGCTCAAAACAACCATCGATGATCTCTCCACGAGCCCCATTGGGTCCAAGCGCCGCCATGACTTGCAGACTCTGCTCAGCGGAGCAATGACCAACTTATACACGTGCCTCGACGGCTTTGCTTACAGCAAGGGCCGCGTGAGAGACAGAATTGAGAAGAAGTTGCTTGAGATATCACATCACATGAGCAACTCCTTGGCCATGCTGAAGAAAGTTCCTGAAGTGAAGAAAACAACTTCGAAATCTGAGCTGTTCCCCGAATATGGAAAGATGAAAAAAGGTTTCCCCTCGTGGGTATCCCCCAATGACAGAAAGCTTCTCCAAGCGTCTGTGAATGAAACCAAGTTCGATCTCGTCGTTGCCAAAGATGGCACTGGCAATTTCACCACCATAGGGGAAGCACTTGCTGTGGCTCCCAACTCCAGCACAACCAGGTTTGTGATACACATAAAGGCGGGGGCGTATTTCGAGAATGTGGAAGTGATCAGGAAGCAGACGAATCTGATGTTTGTCGGAGACGGCATTGGGAAGACAGTAGTGAAAGGTAGTAGGAACGTTGTGGATGGATGGACAACTTTTCAATCAGCTACAGTTGCTGTTGTGGGAGAAGGATTCATAGCAAAGGGTATAACTTTTGAGAATTCAGCAGGGCCAGAGAAACACCAAGCAGTAGCCCTAAGAAGTGGTGCTGACTTCTCGGCTTTTTTCCGTTGCAGTTTTGTTGGCTACCAAGACACACTTTATGTGCATTCCCTACGCCAATTCTATCGAGAATGTGACGTTTATGGTACTGTAGACTTCATTTTTGGCAATGCAGCAGTGGTGTTCCAAAACTGCAACTTATACGCACGGAAACCAAACGAAAATCAGAAGAACTTGTTCACTGCGCAAGGCAGAGAGGACCCTAACCAAAACACTGGCATATCCATCTTGAACTGCAAGATTGCAGCTGCTTCAGATTTAATCCCTGTGAAATCTTCCTTCAAGAGCTACCTAGGTCGTCCATGGAAAACGTACTCAAGAACTGTTTATCTAAAATCTTACATGGAGGATCTGATTGATCCAGCAGGGTGGTTAGAATGGAATGAGACATTTGCATTGGATACACTGTATTATGGAGAGTACATGAATAAGGGTCCAGGTTCAAACACAAGTGCCAGAGTTTCATGGCCAGGTTATAGGGTCATAAACAGCTCAACTGAGGCAACCCAATTCACAGTTACTCAGTTTATTCAAGGCAATGACTGGTTGAACACCACAGGCATTCCATTCTTCTCTGGTTTGAGTTGA 1662 0.4555 MNNFILASIFTVISALLFLATHFTNTPTRATQKHLHFQNHIQVAQSTCQGTLYPELCVSTLATFPDLTSKSVPQVISSVVNHTMYEVKSSFYNCSSLKKKIRNLNPLDQRALDDCLKLFQDTNLELKTTIDDLSTSPIGSKRRHDLQTLLSGAMTNLYTCLDGFAYSKGRVRDRIEKKLLEISHHMSNSLAMLKKVPEVKKTTSKSELFPEYGKMKKGFPSWVSPNDRKLLQASVNETKFDLVVAKDGTGNFTTIGEALAVAPNSSTTRFVIHIKAGAYFENVEVIRKQTNLMFVGDGIGKTVVKGSRNVVDGWTTFQSATVAVVGEGFIAKGITFENSAGPEKHQAVALRSGADFSAFFRCSFVGYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQNCNLYARKPNENQKNLFTAQGREDPNQNTGISILNCKIAAASDLIPVKSSFKSYLGRPWKTYSRTVYLKSYMEDLIDPAGWLEWNETFALDTLYYGEYMNKGPGSNTSARVSWPGYRVINSSTEATQFTVTQFIQGNDWLNTTGIPFFSGLS* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1251 553 Gene3D - 235 552 IPR012334 -
Vra8g1251 553 PANTHER PECTINESTERASE 11 549 - -
Vra8g1251 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 197 IPR035513 -
Vra8g1251 553 PANTHER PECTINESTERASE 11 549 - -
Vra8g1251 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 196 IPR035513 -
Vra8g1251 553 Pfam Plant invertase/pectin methylesterase inhibitor 45 192 IPR006501 GO:0004857
Vra8g1251 553 TIGRFAM PME_inhib: pectinesterase inhibitor domain 13 195 IPR006501 GO:0004857
Vra8g1251 553 SUPERFAMILY Pectin lyase-like 239 551 IPR011050 -
Vra8g1251 553 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Vra8g1251 553 Pfam Pectinesterase 241 538 IPR000070 GO:0030599|GO:0042545
Vra8g1251 553 CDD PMEI-like_3 46 197 - -
Vra8g1251 553 SMART PMEI_2 39 192 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1251 Vra-Chr8 28233901 28237905 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1251 68 548 Carbohydrate Esterase AT4G02320 55.466 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1251 K01051 - gmx:100802881 987.638
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1251 8 28233901 28237905 Vra8g1251 8 28233901 28237905 ECH
Vra3g0730 3 7602466 7604650 Vra8g1251 8 28233901 28237905 PCT
Vra8g1251 8 28233901 28237905 Vra3g0731 3 7620920 7624483 PCT