Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1250 ATGGCTCTTAAGAACATTTCTGTCCTCATATTCTCTCTTTGCTATATGCTTTCCTTCTCTCTCTTGGCATCATTCTCCATCGCAGATGCCAGTTCATCCTCCATTGTTCCACCTGAAACCATTTGCGGGTCCACCGTACACCCTACTTACTGTAGCAAAACCGTGCTTGCCAATCAAAATGGGAACGTCTTCGACTATGGTCGCGTTTCTTTTCAAAAGTCCTTGTCCCAGACACGCAAGTTCCTTAAGTTGGTGGGTTCGTATCTTCAAGGTAGCTTGTCTTTGTCTCAATACACAATTAGTGCTCTTGAAGACTGTCGATACCTTGCTGAGCAAAACTTTGAATACTTATCAAACATTTATGCCACTACTAGCCAAGCTAGCGGTGTTCTTCCAACTTCTCAAGCTGAAGATTTTAAAAACTATCTCAGTGCCGTTTTGACTAACCAACAAACATGCTTAGAAGGTCTACAGAGTACAACTTCAGATGCAAGAGTGAAGAATCACCTGTTATCATCTCTCTCTGATGATTTGAAGCTTTACAGCGTTACGTTGGCTTTGTTTTTAAAGGGGTGGGTGCCTGAGAAGAAAATCATCACATCGTGGCCCCAAAATGGAAGACATTTGAATTTCAAAAATGGTCGCTTGCCATTGGTCATGTCAGATCGAGTACGTGCTATTTATGATTCTGCTAGACACCATGGTAGGAAACTACTAACCACTGATGATGGCGGAAGTGTTGTTGTTAGTGACATCGTGGTTGTTAGTCAAGATGGAAGCGGAAACTTCACCACTATCAACGATGCAATTGCTGCTGCACCAAACAACACAGTTGCTGGTGATGGGTATTTCCTTGTTTTTATCACTGAGGGAGTGTACCAGGAATATGTATCCATTGCCAAAAGCAAGACGTATCTAATGCTTGTTGGAGATGGAATCAATCGGACAATCATCACAGGCAATCACAGTGTTGGAGATAATTTTACAACATTCAATTCAGCAACAGTAGCTGTTGTTGCTAAAGGGTTTGTAGCTGTTAACATAACCTTCCGTAACACTGCTGGAGCGAGCAAGGGTCAAGCAGTGGCACTAAGAAGTGGAGCAGATTTGTCAACATTCTATAGCTGCAGCTTTGAAGGGTATCAAGATACATTGTATACACATTCTCTGAGGCAATTTTACCGAGAATGTGACATATATGGCACCGTTGACTTCATATTTGGAAATGCTGCCGTTGTTTTGCAAAACTGCAATATCTATCCTCGTCTCCCTCTGAGAGGACAATTCAACACGATTACAGCTCAAGGAAGAACTGATCCGAATCAAAACACAGGAACTTCCATACAAAATGCAACTATAAAAGCTGCTGATGATTTGGCTCCAGCTGTTGGCACCGTAGAGACCTACCTTGGGAGGCCATGGAAGGAATATTCAAGGACAGTTATCATGCAGTCTTTTATGGACAGTTTTATAAACCCTGCTGGTTGGCATGAATGGAATGGTGATTTTGCATTGAGCAGCTTGTACTATGCAGAATATAATAACACAGGACCTGCTTCTAACACTTCCAACCGAGTCACCTGGCCTGGTTATCACCTCATCAATGCCACAGATGCATCCAATTTCACCGTCTCTAACTTCTTGGCTGGGGATGATTGGATTCCCCAAACTGGGGTTCCATACTTAACTGGCTTGATATAG 1701 0.4268 MALKNISVLIFSLCYMLSFSLLASFSIADASSSSIVPPETICGSTVHPTYCSKTVLANQNGNVFDYGRVSFQKSLSQTRKFLKLVGSYLQGSLSLSQYTISALEDCRYLAEQNFEYLSNIYATTSQASGVLPTSQAEDFKNYLSAVLTNQQTCLEGLQSTTSDARVKNHLLSSLSDDLKLYSVTLALFLKGWVPEKKIITSWPQNGRHLNFKNGRLPLVMSDRVRAIYDSARHHGRKLLTTDDGGSVVVSDIVVVSQDGSGNFTTINDAIAAAPNNTVAGDGYFLVFITEGVYQEYVSIAKSKTYLMLVGDGINRTIITGNHSVGDNFTTFNSATVAVVAKGFVAVNITFRNTAGASKGQAVALRSGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLRGQFNTITAQGRTDPNQNTGTSIQNATIKAADDLAPAVGTVETYLGRPWKEYSRTVIMQSFMDSFINPAGWHEWNGDFALSSLYYAEYNNTGPASNTSNRVTWPGYHLINATDASNFTVSNFLAGDDWIPQTGVPYLTGLI* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1250 566 CDD PMEI-like_3 40 192 - -
Vra8g1250 566 Gene3D - 250 566 IPR012334 -
Vra8g1250 566 SMART PMEI_2 33 187 IPR006501 GO:0004857
Vra8g1250 566 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Vra8g1250 566 PANTHER PECTINESTERASE 21 564 - -
Vra8g1250 566 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 21 564 - -
Vra8g1250 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 190 IPR035513 -
Vra8g1250 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 188 IPR035513 -
Vra8g1250 566 Pfam Pectinesterase 253 551 IPR000070 GO:0030599|GO:0042545
Vra8g1250 566 Pfam Plant invertase/pectin methylesterase inhibitor 39 187 IPR006501 GO:0004857
Vra8g1250 566 SUPERFAMILY Pectin lyase-like 248 564 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1250 Vra-Chr8 28220088 28222165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1250 30 566 Carbohydrate Esterase AT1G02810 59.253 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1250 K01051 - gmx:100786124 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1250 8 28220088 28222165 Vra8g1250 8 28220088 28222165 ECH