Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1249 ATGGCTAACAAATTACGTAATTCCCTCCGAAAAACAACAGCATTTCTCATCCTCCTCGTACCCTTGTTATTCATCTCCCTGGTTTTCGCAGAAACCCCACCAACCACTACTGTATCTCCCATAACCATATGCAAATCCACCCCAGACCCATCTTATTGCAGTTCCGTCCTCCCTCCCCGAAACGCCAATGTTTACGACTATGGCCGTTTCTCAGTCAAAGAGTCTCTTTCTCAAGCAACTAAGTTCTTGAACTTGGTTAACAGATACCTCAAACGCCGTTCTTCTCTTTCAACCTCCGCAATCCACGCACTCCAAGATTGCCAAACCCTCGCCGAACTCAACGTCGACTTTCTCTCCAGTTCCTTCCAAACAGTGAACCACACAACCACGCTCCTTCCCACTTCGCGAGCTGACGACATCCAAACCCTTCTCAGCGCCATTCTAACCAACCAACAGACCTGCTTGGAAGGCCTCCAAGCCACAGCCTCCGCTTGGCGTTTCAGCAAGGGACTCTTCCTACCGCTTTCCAACGACACCAAGCTCTACACCGTCTCTCTCGCGCTCTTCACCAAGGGATGGGTCCCCACCAACGCTAACGTCACCGCGTTTCACCCACCTGCCAAACACCGCGCCTTTCGAAACGGTCGTTTACCTCTCAAGATGTCCAGCAGAACGCGCGCGATCTACAACTCCGTGAGTCGGAGAAAGCTCCTTCAGGGGAATGTGGGTGACGAGGTGAAGGTTAAGGACATCGTTACTGTCAGCAAAGATGGTAGCGGGAACTTCACCACCTTGAACGACGCCATTGCGGCGGCGCCCAACAAGTCTTCCTCTACATCGGGGTACTTCCTCATCTACGTCACTGCAGGTGTGTACGAGGAAAATGTGTCCATTGATAAGAAAAAGACGTACCTGATGATGGTTGGAGATGGCATCAACAAGACAATTATTACAGGGAATCGAAGTGTTGTTGATGGCTGGACAACTTTCAAGTCCGCAACTTTTGCGGTAGTTGGAGCAGGATTTGTGGGTGTTAACATGACCATCCGCAACACTGCTGGAGCAGAGAAGCACCAAGCCGTAGCACTTCGTAACGGGGCAGATTTATCCACGTTTTACAGTTGTAGTTTCGAGGGGTACCAAGACACACTCTATGCGCATTCCCTGCGACAATTCTACAGGGAATGCGACATCTACGGCACCGTTGATTTCATATTCGGAAACGCGGCGACAGTTTTACAAAACTGTAACCTGTATCCTCGTCTTCCAATGAATGGCCAATTCAACGCCATAACCGCACAAGGCCGAACTGATCCCAACCAAAACACCGGAATTTGTATCCAAAATTGTACTATTAGAGCAGCCGATGATTTGGCAGCGAACGTAAACGCAGCTGAAACTTATCTGGGAAGGCCTTGGAAAAATTACTCAAGAACGGTTTACATGCAGAGTTTTATGGACAGCGTGATCGATGCAGGTGGGTGGCGTGAATGGAACGGTGATTTTGCTTTGAACACTTTGTATTATGCAGAGTTTAACAACACTGGGCCTGGATCGACCACTGCAAACAGAGTCACGTGGCCTGGTTACCACGTGATTAATGCCACCGATGCTGCTAATTTTACCGTCTCTAACTTCTTGCTCGGAGATAACTGGCTGCCCCAGACCACAGTGCCTTACGCAAGTAACTTCGTATAG 1698 0.4941 MANKLRNSLRKTTAFLILLVPLLFISLVFAETPPTTTVSPITICKSTPDPSYCSSVLPPRNANVYDYGRFSVKESLSQATKFLNLVNRYLKRRSSLSTSAIHALQDCQTLAELNVDFLSSSFQTVNHTTTLLPTSRADDIQTLLSAILTNQQTCLEGLQATASAWRFSKGLFLPLSNDTKLYTVSLALFTKGWVPTNANVTAFHPPAKHRAFRNGRLPLKMSSRTRAIYNSVSRRKLLQGNVGDEVKVKDIVTVSKDGSGNFTTLNDAIAAAPNKSSSTSGYFLIYVTAGVYEENVSIDKKKTYLMMVGDGINKTIITGNRSVVDGWTTFKSATFAVVGAGFVGVNMTIRNTAGAEKHQAVALRNGADLSTFYSCSFEGYQDTLYAHSLRQFYRECDIYGTVDFIFGNAATVLQNCNLYPRLPMNGQFNAITAQGRTDPNQNTGICIQNCTIRAADDLAANVNAAETYLGRPWKNYSRTVYMQSFMDSVIDAGGWREWNGDFALNTLYYAEFNNTGPGSTTANRVTWPGYHVINATDAANFTVSNFLLGDNWLPQTTVPYASNFV* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1249 565 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Vra8g1249 565 Gene3D - 245 564 IPR012334 -
Vra8g1249 565 TIGRFAM PME_inhib: pectinesterase inhibitor domain 16 162 IPR006501 GO:0004857
Vra8g1249 565 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 35 563 - -
Vra8g1249 565 Pfam Plant invertase/pectin methylesterase inhibitor 42 188 IPR006501 GO:0004857
Vra8g1249 565 Pfam Pectinesterase 252 550 IPR000070 GO:0030599|GO:0042545
Vra8g1249 565 SMART PMEI_2 35 188 IPR006501 GO:0004857
Vra8g1249 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 191 IPR035513 -
Vra8g1249 565 CDD PMEI-like_3 42 193 - -
Vra8g1249 565 SUPERFAMILY Pectin lyase-like 249 561 IPR011050 -
Vra8g1249 565 PANTHER PECTINESTERASE 35 563 - -
Vra8g1249 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 191 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1249 Vra-Chr8 28209553 28211719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1249 16 565 Carbohydrate Esterase AT4G02330 62.917 0.0 722
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1249 K01051 - gmx:100790729 952.199