Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1236 TTTCTCTGTGTTTGTGCCCCTGCTGCTTATCACAGTCACGAGGGAGAGAGTGTGCGTGTGGCCAAGGCAGAGAGAGAAGCGAAAATGAGCGGAGCAAAGGGGAAGAAGAAGGGAGCAAGCTTCGTGATCGATTGCGCGAAGCCGGTGGAGGACAAGATTATGGACATTGCTTCTCTCGAGAAGTTTCTTCAAGAGAGGATTAAGGTCGGCGGCAAGGCCGGTGCACTCGGCGATTCCGTTACTGTCACACGGGACAAGAGCAAGATCACCGTTACGTCTGACAGCAACTTCTCCAAAAGGTATCTGAAATATTTGACCAAGAAGTACTTGAAAAAGCACAATGTGAGGGATTGGCTTCGGGTGATTGCATCCAACAAGGACAGGAATGTCTATGAGTTGAGATATTTCAACATTGCTGAGAATGAGGGTGAAGAGGAAGACTAA 444 0.4865 FLCVCAPAAYHSHEGESVRVAKAEREAKMSGAKGKKKGASFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTRDKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1236 147 PANTHER 60S RIBOSOMAL PROTEIN L22 21 147 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vra8g1236 147 Pfam Ribosomal L22e protein family 37 145 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vra8g1236 147 Gene3D - 28 147 IPR038526 -
Vra8g1236 147 PANTHER - 21 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1236 Vra-Chr8 28019619 28021097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1236 32 147 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 89.655 1.92e-64 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1236 K02891 - gmx:100500073 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1236 8 28019619 28021097 Vra8g1236 8 28019619 28021097 ECH