Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1233 ATGGTCGAAACCAGACGCAGCAGCTCTTCCTCTTCCAAGCGCTCTCTTTCTTCCTCCTCTCCCCCCAACAACACCAAAAGATCCAAGGTGTCAGAGGATTCCTCATCAACAACTGTGCCCTCCGTAGCTCCGGTCAACGAATCTGGACCCGCCAATGAATCTGCCGAACCGGAGCTGCGGCCCTCTGATCTACCCGATACGGCGTCGTTGAAGGCCGTCGATGGGTGTGATGCGATTTCGCCTGATAAATCTCCGTCTACACCTGTTGAGGGGGAGGCTTTGGTGTCCCCTCAGTGTCTAGGTGAAACAGCGGAGAAATCGAAGGGGGCTGGGGCGGCGGCGGGGGCGACTGTTTCCGCGGTTGGTCGGTCCAAGAAACGCCCTACGAAATTGAACCCCAAGGTTGCGTGGGCAAAGCTCCTTTCACAGTGTTCTCAGCGTGGAGGCTCGTCTGTTGCATTACTTGAAATCACAGGGGGTAAAGGTTCTATTCAAGTTAATGGCAGAACACATCGAAAGAATACCCGTTTGATTTTAAGTGGAGGAGATGAGGTGGTCTTTGGTTCGTCTGGCAAGCATGCTTACATCTTTCAGCAGCTCACAAATAACAATATTAGTCATGCCGGTATACCTTCTTCCGTGAGTATTTTAGAAGCCCAGAGTGCTCCCATAAATGGAGCGCAAGTTGAAGCTAGATCTGGTGACCCTTCTGCCGTTGCTGGAGCATCAATATTGGCCTCTTTATCTAATCTTCATAAAGACTTATCTCTCCTTTCATCTCCTGCTAAAAATGGAAAGAATGTGCAACAGAACACTGACATTTCATCACTACCTTCTGGCAATGGGGATGATGTGCCTGACAGTGAAATGAAGGACGCCACCAGTAAAGATGTACCACCATCTGGAGTTTTCTCTGCTGACAAAACTGTTCTAGCATCCTCTAACACTGTTAATGAAAATCCCAGCATTGACGCAACCGAAGACACAACTGTGGATGCTGATGTTGGAAAGGTAGCTGCTGCTACATATGAATTGAGGCCATTACTGCGCATGCTTGCTGGCTCATGTCCTGAACTTGATTTAAGTTGTGGCATTACTAAGATATTGGAAGAGCGAAGGGAATTAAGAGAACTCCTTAAAGATGTTGATACCCCAACAATATTGGCTTCAACCAGGCGGCAGGCATTCAAGGACAGTTTAGAACAGAGAATTCTCAAATCTGAGGATATTGATGTCTCTTTTGAAACATTCCCCTATTATCTGAGTGATACAACAAAGAGTGTTTTGATCGCCTCTACATTTATTCATTTGAAGTGCAATGGCTTTGCAAAATATGCTTCCGACCTCCCATCAGTTTCTCCACGAATATTGCTATCTGGTCCTGCAGGTTCGGAAATATATCAGGAGACTTTGTGCAAGGCTCTAGCGAAGCATTTTGGTGCCAGGCTACTGATTGTGGATTCTCTTTCATTGCCCGGTGGAGCTCCTGCAAAAGAAGTAGATTCTGCTAAAGAAAGTTCCAGACCTGAAAGGCCATCTGTGTTTGCCAAGAGAAGTTCCCAGACTGCCACATTACATCACAAGAAACCAGCGTCTAGTGTTGACGCTGAAATTATAGGTGGATCCACACTAAGTTCTCAAGCCATGCTGAAGCAAGAGGTTTCCACTGCATCGTCTAAAGGGACTACTCTTAAAGAGGGTGATAGAGTAAAATTTGTTGGGAACTTTCCTTCTGCCGTCTCGGCACTACCAAATTATCCTTCAAGGGGACCAAGCTATGGCTCCCGGGGTAAAGTTATGCTTGCTTTTGAAGATAATGGGTCTTCAAAAATTGGGGTTAGGTTTGATAAATCAATTCCAGATGGCAATGATCTTGGAGGCCTTTGTGAAGATGATAGAGGGTTCTTTTGTTCAGCAAATCATTTACTAAGGGTAGATGGCTCCGGAGGGGATGATACGGACAAAGTTGCAATAAATGATATCTTCGAGGTTACCTCTAATCAGAGTAAAAGTGGTCCATTAGTGTTGTTCATTAAAGATATAGAGAAGACAATGGTTGGGAACTATGAAGTTTTGAAAAATAAATTCGAAAGCTTGCCACCAAATGTTGTCGTTATTGGCTCTCATACTATGCTTGACAGTAGAAAGGAGAAGACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGGGAGCAATCAGACAGCACTACTCGATCTTGCCTTCCCGGATAACTTTAGTAGACTACATGATCGGAGCAAAGAAACCCCTAAAGTAATGAAGCAACTTGGGCGCCTTTTCCCAAACAAAGTGACAATACAGCTGCCTCAGGATGAGAGTTTACTCTCCGATTGGAAGCAACAATTAGAACGTGACATTGAAACTATGAAAGCTCAGTCCAATATTGTCAGTGTTCGCACGGTTCTCAACAGGATTGGATTGGATTGCCCTGACCTTGAGACTCTTTGCATCAAAGATCAAACCCTAGCTACTGAAAGTGTGGAGAAGATCGTTGGCTGGGCTATAAGTTACCATTTTATGCATTCATCTGAAGCCTCTACCAAAGATTCTAAGCTTGTGATATCTGCAGAAAGCATAAATTATGGGCTTAACATTCTACATGGCATTCAAAATGAGAACAAAAGCTTGAAAAAATCACTCAAGGATGTGGTTACTGAGAATGAGTTTGAGAAGAAGCTGCTTGCTGATGTTATTCCACCAACTGATATTGGGGTCACATTTGATGATATTGGAGCTTTAGAAAATGTGAAGGACACCTTGAAGGAATTGGTTATGCTTCCTCTTCAGAGGCCTGAATTATTTTGCAAAGGACAGCTCACAAAGCCTTGCAAGGGAATATTGCTTTTTGGCCCCCCTGGAACAGGAAAAACAATGCTTGCAAAGGCTGTAGCTACTGAAGCTGGAGCAAATTTCATTAACATTTCAATGTCCAGCATTACTTCAAAGTGGTTTGGTGAAGGAGAAAAATATGTAAAAGCAGTTTTTTCTCTGGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGATGAGGTTGATAGTATGCTAGGAAGACGTGAAAACCCCAGTGAGCACGAGGCTATGCGAAAAATGAAAAATGAGTTTATGGTTAATTGGGATGGTTTGCGTACTAAAGATAAAGAGCGGGTACTTGTTCTTGCTGCTACAAACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGCGGCTTCCAAGACGATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGTCATTTTAGCGAAAGAAGATTTAGCACCTGATGTTGATTTTGAAGCAATGGCTAATATGACTGATGGATATTCTGGGAGTGATCTAAAGAACCTTTGTGTCACAGCAGCTCACTGCCCAATACGAGAGATCTTAGAGAAAGAAAAGAAGGATAAAAGCTTAGCACTATCTGAGAACAAACCTTTACCTGGATTGTGTGGCAGCTCCGACATTCGGCCTTTGAAGATTGATGATTTTAGATATGCACATGAGCAGGTGTGTGCGAGCGTGTCATCAGAGTCAACAAATATGAATGAACTACTCCAATGGAATGATCTCTACGGAGAAGGAGGATCAAGAAAAATGAGATCATTGAGCTATTTCATGTAA 3651 0.4363 MVETRRSSSSSSKRSLSSSSPPNNTKRSKVSEDSSSTTVPSVAPVNESGPANESAEPELRPSDLPDTASLKAVDGCDAISPDKSPSTPVEGEALVSPQCLGETAEKSKGAGAAAGATVSAVGRSKKRPTKLNPKVAWAKLLSQCSQRGGSSVALLEITGGKGSIQVNGRTHRKNTRLILSGGDEVVFGSSGKHAYIFQQLTNNNISHAGIPSSVSILEAQSAPINGAQVEARSGDPSAVAGASILASLSNLHKDLSLLSSPAKNGKNVQQNTDISSLPSGNGDDVPDSEMKDATSKDVPPSGVFSADKTVLASSNTVNENPSIDATEDTTVDADVGKVAAATYELRPLLRMLAGSCPELDLSCGITKILEERRELRELLKDVDTPTILASTRRQAFKDSLEQRILKSEDIDVSFETFPYYLSDTTKSVLIASTFIHLKCNGFAKYASDLPSVSPRILLSGPAGSEIYQETLCKALAKHFGARLLIVDSLSLPGGAPAKEVDSAKESSRPERPSVFAKRSSQTATLHHKKPASSVDAEIIGGSTLSSQAMLKQEVSTASSKGTTLKEGDRVKFVGNFPSAVSALPNYPSRGPSYGSRGKVMLAFEDNGSSKIGVRFDKSIPDGNDLGGLCEDDRGFFCSANHLLRVDGSGGDDTDKVAINDIFEVTSNQSKSGPLVLFIKDIEKTMVGNYEVLKNKFESLPPNVVVIGSHTMLDSRKEKTQPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKVMKQLGRLFPNKVTIQLPQDESLLSDWKQQLERDIETMKAQSNIVSVRTVLNRIGLDCPDLETLCIKDQTLATESVEKIVGWAISYHFMHSSEASTKDSKLVISAESINYGLNILHGIQNENKSLKKSLKDVVTENEFEKKLLADVIPPTDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPSEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNREKILRVILAKEDLAPDVDFEAMANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKDKSLALSENKPLPGLCGSSDIRPLKIDDFRYAHEQVCASVSSESTNMNELLQWNDLYGEGGSRKMRSLSYFM* 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1233 1216 MobiDBLite consensus disorder prediction 260 305 - -
Vra8g1233 1216 Pfam AAA+ lid domain 1105 1141 IPR041569 -
Vra8g1233 1216 SMART AAA_5 948 1085 IPR003593 -
Vra8g1233 1216 MobiDBLite consensus disorder prediction 1 48 - -
Vra8g1233 1216 Gene3D - 910 1190 IPR027417 -
Vra8g1233 1216 Gene3D - 1084 1178 - -
Vra8g1233 1216 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 147 - -
Vra8g1233 1216 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 147 1216 - -
Vra8g1233 1216 MobiDBLite consensus disorder prediction 1 129 - -
Vra8g1233 1216 MobiDBLite consensus disorder prediction 260 282 - -
Vra8g1233 1216 MobiDBLite consensus disorder prediction 495 532 - -
Vra8g1233 1216 ProSitePatterns AAA-protein family signature. 1055 1074 IPR003960 GO:0005524|GO:0016887
Vra8g1233 1216 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 147 - -
Vra8g1233 1216 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 147 1216 - -
Vra8g1233 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 911 1190 IPR027417 -
Vra8g1233 1216 CDD AAA 950 1083 - -
Vra8g1233 1216 MobiDBLite consensus disorder prediction 513 528 - -
Vra8g1233 1216 Pfam ATPase family associated with various cellular activities (AAA) 952 1081 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1233 Vra-Chr8 27953453 27965868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1233 947 1152 Calmodulin-binding Proteins AT3G56690 36.190 4.86e-31 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1233 - - gmx:100801477 2103.18