Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1230 ATGTCGTTTGCAGCTTCAAATTGGCTGACGTCCCTCTCGTGTTCATTGAATGCAACTCCAAATCTGCCTCACTGGCTGAGATTCATTTTCCTCTCTCCATGCCCTCAGAGAGCTCTTTTTTCTGGTGTTGACGTTCTGCTTCTGTTGACCCTCTTTGTGTTTGCGCTTGTAAAGCTCTATTCTAGGCTCACTTCCAATGGCAACGATAACTCACACCTTGATAAACCACTTATCAGAGACAACAGAGTTTCTGTCAGGACAACGGCATGGTTTAAGCTAACTCTAATTGCGACCACTCTTTTGACAATATTGTACGCGGTGGCTTGCATTCTAGTGTTTGTCAGTTCCACCAACGTGCCCTGGAAGCAAACTGATGGGTTGTTTTGGTTACTTCAGGCCATAACACAACTAGTCCTTATAGTCTTGATCGTCCATGAGAAAAGATTTGAAGCTGTTGCTCACCCTTTGTCTCTCAGAATATACTGGATTGTCAATTTCATTGTGGTTTCTCTGTTCACTGCTTCTGGGATCATACGTTTGGTCTCTGTGGGAGTGGAGGATGGGAAACACTTCAGCTTCATGGTTGATGATACGGTTTCTTTCATTTCTTTACCCTTGTCACTTTTTCTGCTCTGTGTTGCGGTTAAAGGGTTCACCGGGATTGTGTCTGGCGAAGAAACAGAACCCCTTATTGACGAGGAAACAAAACTACATGAGAAATCCAACGTTACTGGCTTTGCTTCAGCTTCTGCAATATCCAAGGCCTTTTGGATTTGGATAAACCCGTTGTTGAGCAAAGGGTACAAGTCACCTTTGAAGATTGATGAAATTCCATACCTTTCAGCTCAGCATAGAGCTGAGAGGATGTCCGTTATCTTTGAATCAAAGTGGCCTAAATCAGATGAGAAGTCGGAGCACCCGGTTCGAACAACGTTGCTTCGGTGTTTCTGGAAGGAGATAGCCTTCACAGCATTTCTTGCTGTTATTAGGCTATCTGTGATGTTCGTAGGGCCAGTTCTCATTCAAAGTTTTGTTGATTTTACAGCAGGAAAAGGTAGCTCTGTGTACGAAGGGTACTACCTCGTGTTGGTTCTCCTGTGTGCCAAATTTGTAGAAGTTTTGACAACTCACCATTTCAACTTCAACTCTCAGAAGCTTGGGATGCTTATCAGATGCACTCTCATCACTTCTTTGTACAAGAAGGGGCTCAGGCTAACGGGTTCCGCGAGGCAAGATCATGGTGTTGGGCCTATTGTCAATTACATGGCTGTTGATACCCAGCAACTCTCTGATATGATGCTCCAGTTACACGCTGTGTGGATGATGCCATTTCAAGTTGGCATTGGTTTGTTTTTGCTCTACAATTGTCTGGGAGCCTCGGTGATTACGGCTACAATTGGACTTCTCGGTGTCATTGCATTTGCTGTGGTGGCTAATAGAAGAAACAAGCGTTACCAGTTTAACGCCATGATGTGCCGTGACTCAAGGATGAAGGCAGTGAATGAGTTGCTTAATTACATGCGAGTCATCAAGTTCCAAGCATGGGAAGAACATTTCAATGGGAGAATTTTGGGTTTCCGCAAGTCTGAGTTTGAGTGGCTCTCCAAGTTTATGCAATCAATCTGTGGCGTTATTATTGTATTGTGGAGCACCCCATTGTTGATATCAACTCTGACGTTTGGTACCGCGCTTTTGCTTGGAGTTCGACTTGATGCAGGCACGGTTTTCACCACCACAACTGTGTTTAAGATCCTCCAGGAACCTATTAGGACCTTTCCTCAGAGTATGATATCTCTTTCACAAGCGCTGGTATCACTTGGGAGGTTAGATAGGTACATGTCTAGCAGGGAATTGTCGGATGATTTGGTTGAGAGAGAGGAAGGGTGTAGTGGACGCATTGCTGTGCAGGTCAGAGATGGAACCTTTAGCTGGGATGATGATGGTCAGCTGCAAGACTTGAAAAACATTAATTTGGAGATTAATAAGGGGGAGCTTACAGCAATTGTTGGGACTGTGGGGTCGGGAAAATCTTCACTCCTTGCTTCAATTCTTGGTGAGATGCACAAAAATTCTGGGAAGATTCAAGTTTGTGGGAGTACTGCTTATGTTGCTCAAACATCTTGGATTCAAAACGGGACCATTGAGGAAAACATTCTCTTTGGCTTACCAATGAACAGGCAGAAGTACAATGAAGTGGTCAGAGTTTGTAGCTTGGAGAAAGACTTGGAAATGATGGAGCATGGTGATCAGACAGAGATTGGAGAGCGTGGCATCAACCTAAGTGGGGGTCAGAAGCAGCGCATACAGCTTGCCAGGGCTGTATATCAAGATTCTGATATATATCTTCTTGATGATGTTTTCAGTGCTGTAGATGCACATACTGGCACTGAAATATTCAAGGAATGTGTGAGGGGATCTCTTAAAGGAAAGACCATTATTCTTGTAACACACCAAGTAGACTTCCTACATAATGTGGATCTCATAGTGGTGATGAGGGATGGAGCGATAGTACAATCAGGGAAGTATGATGATCTACTTGCTTCTGGAATGGATTTTAGTGTTCTTGTTGCAGCACATGAGACATCGATGGAACTAGTGGAGCAAGGTGCGGTTGTGCCTGGGGAAAATCTGAATCAGCAAATAAAATCACCAAAGGCAGGTTATAATAACAGAGAAGCCAATGGTGAAAGAAATTCTCTTGACCAGCCCAAGTCTGACAATGAAGGTTCTAAACTCATCAAAGAAGAGGAAAGAGAAACTGGGAAAGTTAGCTTTCGTATCTATAAACTCTACTGCACTGAGGCTTTTGGGTGGTGGGGCATTGGAGGAGTAATCCTTCTTTCTGTGTTGTGGCAAGCATCAATGATGGCGAGTGACTATTGGTTGGCTTATGAAACATCCGAAGAGCGTGCACAGTTCTTCAACCCTTCTGTGTTTATTTCTATCTACGGAATTATTGCTGTAGTTTCGGTTATTTTGATTGTGCTAAGAGCCTACGCTGTTATGGTCCTCGGGTTAAAGACAGCACAGATTTTCTTCGCTCAAATTCTCCACAGCATCTTGCATGCCCCTATGTCTTTCTTTGACACCACTCCATCCGGGAGAATTCTAAGCAGGGCATCCACTGATCAGACCAATGTTGATGTCTTTATCCCCTTGTTCCTCAATTTTGTGATAGCCATGTACATTACAGTGATCAGCATCTTCATAATCACATGTCAAAATTCTTGGCCGACAGCTTTCCTGTTAGTTCCTCTTGCTTGGTTAAACATTTGGTACCGGGGTTATTTTCTTGCTTCCTCTCGTGAGTTAACTCGTCTGGATTCGATTACAAAAGCACCTGTCATTCACCATTTCTCTGAAAGCATTTCGGGGGTCATGACAATCCGCGCATTCGGAAAGCAGAAGCAGTTTTGCGTAGAAAATATTAAACGGGTGAATTCTAATTTGCGAATGGATTTCCACAACTTCAGTTCCAATGCGTGGTTGGGTTTCCGCTTAGAATTGCTTGGAAGCATAGTTTTTTGCTTCTCCGCCATGTTCATGATCATGTTACCCAGCAATATCATAAAGCCAGAGAATGTTGGTTTGTCGCTCTCATATGGGTTATCATTAAACGCCGTTATGTTCTGGGCCATTTACATGAGCTGTTTCATTGAAAACAAATTGGTATCTGTTGAGAGGATCAAACAGTTCACAAATATTCCATCCGAAGCAACATGGAGAAACAAGGATCGTGTGCCTCCTGCAAATTGGCCCGGTCAAGGCAATGTTGATATCAAAGATTTGCAGGTTAGATATCGTCCCAACACCCCTTTGGTTCTTAAAGGCATCACCTTAAGCATCAATGGAGGAGAAAAAGTTGGTGTTGTTGGTCGAACAGGAAGTGGAAAATCAACTTTGATTCAAGTTTTCTTCAGGCTGGTTGAACCAACAGGAGGAAAAATAATAATTGACGGCATTGACATATCTAGCTTGGGACTTCACGATCTTAGATCACGGTTTGGTATCATTCCTCAAGAGCCTGTCCTTTTTGAAGGAACAGTTCGAAGTAACATTGATCCAACTGGACAATATACAGACGAAGAGATATGGAAGAGTTTGGAACGATGTCAGCTAAAAGAAGCAGTGGCTTCCAAGCCAGAAAAACTTGACTCTTCAGTGGTTGATAATGGAGATAACTGGAGTGTGGGGCAGAGACAGTTGCTTTGTTTGGGAAGAGTTATGCTTAAGGAAAGTAGGTTGTTGTTTATGGATGAGGCAACAGCTTCTGTTGATTCTCAAACCGATGCTGTGATTCAAAAGATCATCCGAGAGGACTTTGCAGCACGTACCATCATCAGCATTGCTCATAGAATACCAACAGTAATGGACTGCGATAGAATTCTAGTTGTGGACGCAGGGAAGGCAAAAGAATTTGACTCACCAGCCAACTTGGTCCAAAGGCCATCACTCTTTGTTGCTTTAGTTCAGGAGTATGCCAATCGCTCAAGTGGCCTTTAA 4503 0.4344 MSFAASNWLTSLSCSLNATPNLPHWLRFIFLSPCPQRALFSGVDVLLLLTLFVFALVKLYSRLTSNGNDNSHLDKPLIRDNRVSVRTTAWFKLTLIATTLLTILYAVACILVFVSSTNVPWKQTDGLFWLLQAITQLVLIVLIVHEKRFEAVAHPLSLRIYWIVNFIVVSLFTASGIIRLVSVGVEDGKHFSFMVDDTVSFISLPLSLFLLCVAVKGFTGIVSGEETEPLIDEETKLHEKSNVTGFASASAISKAFWIWINPLLSKGYKSPLKIDEIPYLSAQHRAERMSVIFESKWPKSDEKSEHPVRTTLLRCFWKEIAFTAFLAVIRLSVMFVGPVLIQSFVDFTAGKGSSVYEGYYLVLVLLCAKFVEVLTTHHFNFNSQKLGMLIRCTLITSLYKKGLRLTGSARQDHGVGPIVNYMAVDTQQLSDMMLQLHAVWMMPFQVGIGLFLLYNCLGASVITATIGLLGVIAFAVVANRRNKRYQFNAMMCRDSRMKAVNELLNYMRVIKFQAWEEHFNGRILGFRKSEFEWLSKFMQSICGVIIVLWSTPLLISTLTFGTALLLGVRLDAGTVFTTTTVFKILQEPIRTFPQSMISLSQALVSLGRLDRYMSSRELSDDLVEREEGCSGRIAVQVRDGTFSWDDDGQLQDLKNINLEINKGELTAIVGTVGSGKSSLLASILGEMHKNSGKIQVCGSTAYVAQTSWIQNGTIEENILFGLPMNRQKYNEVVRVCSLEKDLEMMEHGDQTEIGERGINLSGGQKQRIQLARAVYQDSDIYLLDDVFSAVDAHTGTEIFKECVRGSLKGKTIILVTHQVDFLHNVDLIVVMRDGAIVQSGKYDDLLASGMDFSVLVAAHETSMELVEQGAVVPGENLNQQIKSPKAGYNNREANGERNSLDQPKSDNEGSKLIKEEERETGKVSFRIYKLYCTEAFGWWGIGGVILLSVLWQASMMASDYWLAYETSEERAQFFNPSVFISIYGIIAVVSVILIVLRAYAVMVLGLKTAQIFFAQILHSILHAPMSFFDTTPSGRILSRASTDQTNVDVFIPLFLNFVIAMYITVISIFIITCQNSWPTAFLLVPLAWLNIWYRGYFLASSRELTRLDSITKAPVIHHFSESISGVMTIRAFGKQKQFCVENIKRVNSNLRMDFHNFSSNAWLGFRLELLGSIVFCFSAMFMIMLPSNIIKPENVGLSLSYGLSLNAVMFWAIYMSCFIENKLVSVERIKQFTNIPSEATWRNKDRVPPANWPGQGNVDIKDLQVRYRPNTPLVLKGITLSINGGEKVGVVGRTGSGKSTLIQVFFRLVEPTGGKIIIDGIDISSLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYTDEEIWKSLERCQLKEAVASKPEKLDSSVVDNGDNWSVGQRQLLCLGRVMLKESRLLFMDEATASVDSQTDAVIQKIIREDFAARTIISIAHRIPTVMDCDRILVVDAGKAKEFDSPANLVQRPSLFVALVQEYANRSSGL* 1501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1230 1500 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 82 1499 - -
Vra8g1230 1500 CDD ABC_6TM_ABCC_D2 944 1233 IPR044726 GO:0140359
Vra8g1230 1500 Gene3D ABC transporter type 1, transmembrane domain 904 1239 IPR036640 GO:0005524|GO:0016021
Vra8g1230 1500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1251 1491 IPR027417 -
Vra8g1230 1500 SUPERFAMILY ABC transporter transmembrane region 312 614 IPR036640 GO:0005524|GO:0016021
Vra8g1230 1500 MobiDBLite consensus disorder prediction 881 896 - -
Vra8g1230 1500 Gene3D ABC transporter type 1, transmembrane domain 295 614 IPR036640 GO:0005524|GO:0016021
Vra8g1230 1500 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1258 1492 IPR003439 GO:0005524
Vra8g1230 1500 CDD ABC_6TM_ABCC_D1 322 609 IPR044746 GO:0140359
Vra8g1230 1500 Gene3D - 615 872 IPR027417 -
Vra8g1230 1500 CDD ABCC_MRP_domain2 1256 1476 - -
Vra8g1230 1500 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 635 858 IPR003439 GO:0005524
Vra8g1230 1500 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 943 1221 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra8g1230 1500 SMART AAA_5 1284 1468 IPR003593 -
Vra8g1230 1500 SMART AAA_5 662 835 IPR003593 -
Vra8g1230 1500 ProSitePatterns ABC transporters family signature. 760 774 IPR017871 GO:0005524
Vra8g1230 1500 Gene3D - 1241 1491 IPR027417 -
Vra8g1230 1500 MobiDBLite consensus disorder prediction 881 913 - -
Vra8g1230 1500 SUPERFAMILY ABC transporter transmembrane region 938 1238 IPR036640 GO:0005524|GO:0016021
Vra8g1230 1500 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 321 601 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra8g1230 1500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 633 853 IPR027417 -
Vra8g1230 1500 Pfam ABC transporter 653 786 IPR003439 GO:0005524
Vra8g1230 1500 Pfam ABC transporter 1275 1423 IPR003439 GO:0005524
Vra8g1230 1500 Pfam ABC transporter transmembrane region 947 1194 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra8g1230 1500 Pfam ABC transporter transmembrane region 322 588 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra8g1230 1500 MobiDBLite consensus disorder prediction 897 913 - -
Vra8g1230 1500 CDD ABCC_MRP_domain1 635 834 - -
Vra8g1230 1500 PANTHER ABC TRANSPORTER C FAMILY MEMBER 4 82 1499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1230 Vra-Chr8 27896404 27904900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1230 632 851 Calmodulin-binding Proteins AT2G36910 30.508 2.34e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1230 - K05666 gmx:100793361 2711.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1230 8 27896404 27904900 Vra3g0708 3 7456711 7463119 PCT