Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1228 ATGAAGTTCTGCAAGACCTACCAGAGTTACATTCAAGGGCATGGCCACAAGCTCCCTGCTGTTGGCTTCAAGAAGCTCAAAAAGACCATGAAAAGGTGCAGGAGAGTCTCCACACCCACCTGCCCCGATCATTGCCGAGTGTGCGATGGGACCTTTTTCCCTTCCCTTCTCAAAGAGATGTCAGAGATAGTAGGGTGCTTTAACCAGCGAGCGCAGAAATTGCTGGAAGTGCATCTTGCTTCTGGCTTCAGAAAATACTTTCTCATGTTGAAAGGAAAATTGCATAGGAATCGTACTGGTCTAATCCAAGAAGGCAAAGATCTAGTCATATATGCACTCATAAATGCCATTGCAATTCGAAAAATATTAAAGAAGTATGACAAGATTCATTATTCCAAGCAAGGTCAATTATTCAAGTCAAAAGTCCAGACCATGCACAAGGAAATTCTTCAGAGTCCTTGGCTTTCTGAGCTTATTGCCTTACACATTAACTTGAGGGAAACAAAAGCCAAGTCCAGGGAGGCATCTGCACTGTTTCATGGATGTTATCTCACATTCAAGGATGGAAAACCATCACTTACTTGTGAGCTCTTTGATTCCTTCAAAATTGACATTAACCTAACATGCTCCATATGCTTGGATACAGTGTTTGATCCAGTTTCTCTGGCATGCGGCCACATTTTCTGCTACACCTGCGCTTGCTTAGCTGCGTCAGTTACCATTGTCGATGGACTTAAGGAAGCAAAGTCCAAAGCAAAATGTGCTCTATGCCGACAGCAAGGAATTTACAAAGATGCTATACACTTGGAAGAATTGAATATTCTGCTAGGTCGAAGGTGCAAAGAGTACTGGGAGCAAAGGCTTCGGATGGAGAGAAAAGAGAGGGTTAAGCAAGTGAAGGAGCACTGGGAAACGCAGTGTAGGGCGTTTGTGGGAATCTAA 942 0.4363 MKFCKTYQSYIQGHGHKLPAVGFKKLKKTMKRCRRVSTPTCPDHCRVCDGTFFPSLLKEMSEIVGCFNQRAQKLLEVHLASGFRKYFLMLKGKLHRNRTGLIQEGKDLVIYALINAIAIRKILKKYDKIHYSKQGQLFKSKVQTMHKEILQSPWLSELIALHINLRETKAKSREASALFHGCYLTFKDGKPSLTCELFDSFKIDINLTCSICLDTVFDPVSLACGHIFCYTCACLAASVTIVDGLKEAKSKAKCALCRQQGIYKDAIHLEELNILLGRRCKEYWEQRLRMERKERVKQVKEHWETQCRAFVGI* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1228 313 CDD SPX_BAH1-like 2 136 - -
Vra8g1228 313 SMART ring_2 209 257 IPR001841 -
Vra8g1228 313 Pfam Zinc finger, C3HC4 type (RING finger) 209 257 IPR018957 GO:0046872
Vra8g1228 313 ProSitePatterns Zinc finger RING-type signature. 224 233 IPR017907 -
Vra8g1228 313 SUPERFAMILY RING/U-box 201 260 - -
Vra8g1228 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 311 IPR013083 -
Vra8g1228 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 313 IPR033326 -
Vra8g1228 313 ProSiteProfiles SPX domain profile. 1 140 IPR004331 -
Vra8g1228 313 ProSiteProfiles Zinc finger RING-type profile. 209 258 IPR001841 -
Vra8g1228 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1228 Vra-Chr8 27873507 27884416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1228 206 260 C3H Transcription Factor Family AT4G28270 35.000 8.55e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1228 K16275 - gmx:100803060 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1228 8 27873507 27884416 Vra3g0709 3 7465461 7468416 PCT