Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1211 ATGGGTGACAACATCAACATTGGCAAAGTCTTAGACAGAGAATGCTTTAAGTACAACTTCACATCTTCAACTTCAACTGCAACTGCAACTGCAAGTGACACCTCTGCACAAGATGGGGTCATCAAAGAGCAGGATCGGTTGCTTCCAATAGCTAATGTGGGCAGAATCATGAAGCAAACTCTTCCCCCTAATGCCAAGATCTCAAAAGAAGCAAAAGAAACCATGCAGGAATGTGTGTCTGAGTTCATCAGCTTTGTCACTGGGGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAAACCGTCAATGGTGACGATATTTGCTGGGCCTTGGCTACCCTAGGGTTTGATGACTACGCTGAGCCTCTTAAAAGGTACTTGCATAAGTATAGGGAGTTGGAGGGGGAGAGGGCTACCCAAAATAAGAGTAACACTTATGAAAACATATAA 450 0.4444 MGDNINIGKVLDRECFKYNFTSSTSTATATASDTSAQDGVIKEQDRLLPIANVGRIMKQTLPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHKYRELEGERATQNKSNTYENI* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1211 149 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 24 145 - -
Vra8g1211 149 ProSitePatterns NF-YB/HAP3 subunit signature. 78 94 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vra8g1211 149 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Vra8g1211 149 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Vra8g1211 149 PRINTS CCAAT-binding transcription factor subunit A signature 113 131 - -
Vra8g1211 149 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 24 145 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vra8g1211 149 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 47 111 IPR003958 -
Vra8g1211 149 Gene3D Histone, subunit A 34 148 IPR009072 GO:0046982
Vra8g1211 149 SUPERFAMILY Histone-fold 44 143 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1211 Vra-Chr8 27507517 27508831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1211 18 141 CCAAT-HAP3 Transcription Factor Family AT2G47810 68.939 2.39e-63 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vra8g1211 CBFD_NFYB_HMF 6.1e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1211 K08065 - gmx:100817274 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1211 8 27507517 27508831 Vra8g1211 8 27507517 27508831 ECH
Vra3g0387 3 4551197 4556602 Vra8g1211 8 27507517 27508831 PCT