Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1210 ATGTCAAAAATTTCAGGTGATGAAGGAAGTTTCTCCTCAGCAAACAGTGTGGAAGAAGTTCATGAAGAAAGCGAGCAGCAACAGCCACAGAAGCGGCATGGCTCAAGTTCTGGGGCTTGCAACACCAATAGATCAAGTAATCAACAGCAGCAGCAGCAACAAGCAACCAAGAAGAAAAGAAACCTACCTGGAACCCCAGATCCGAATGCTGAAGTTATTGCTTTATCACCAACCACATTAATGGCAACAAATAGATTCGTTTGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGCAGAGGTCACAATCTTCCATGGAAACTGAGGCAAAGAGCAAGCAACGAGGTGAAGAAAAGGGTTTATGTTTGCCCTGAGCCCTCATGCGTCCACCACAACCCAGCTCGAGCATTAGGAGACCTCACCGGCATAAAAAAGCATTACAGCAGAAAACATGGTGAAAAAAAGTGGAAATGTGACAAGTGCTCTAAAAGATATGCAGTCCAATCTGATTGGAAGGCCCACCACAAAACCTGTGGCACCAGGGAATACAAATGTGATTGTGGGACCATATTTGCCAGAAGAGACAGCTTTATCACACACAGGGCCTTTTGTGACGCATTAACCGAAGAAAACAACCGAGTAAACCCTTCATTAACGAGTGGCGCTGGCATGGCACCAAGCTTGCAAAATGAATTGCAGGAGCTGATGGCCACAATGCCTCTAAGCACTAGTCCAAACAACGTAGTACCAGAATTCAACAACAACTACGAGTCTAGTAAGAGGCCACTCAAAAGCCTATCCCAAGAACATCTTGTCCCAATGCCATTTAAGTCCATGAGCATGAGGGGTTGCATGTCCTCTACCACTTCAGGTACACTCTTTGGTGGTCCAAAAAACATGTCACTCCCCTCATCTTCCACCCTTCAACTCAGCTCCAACAACTCTCATACTTTCAATTACTTCCAAGACACCAAGAACTCTGCTGCATCAGCTCACATGTCTGCCACAGCTTTATTACAGAAAGCAGCCCAAATGGGTGCCGCTGCAAGCAATAATAGCATTAACTCTCCCACCATGATGCAGAAAAGCTTTGTTAGTGGCATCATTGGTCCTTCTTCCTATGACCCCTTCCATCATCCGCACCCTGATGATCAATCTCACATGCCTGGGATTAGGGATGCTGGAGCATTCACCAACCAATTTTTCCACAAGGGGCAACAAGAAATGTCAGCAATACTTGATTCCAACACCAGTGATATGGGAATCTTGGGTGCAATGTTCATGGGAAGTGACCACAACGAAGGCGTGATGAAGAACGTGGAACAAGAGGTTGGTGCTAGTACTTCAAGTTTCATTCGTAGAAGAGATGTATCAGAAGGAAATCCAACGGGGGCTTCAAGGATCCATGATTTCTTGGGCGTTGGGGGTGCAACTTCAAGAGCAGGGAGTTTGCATGAACCACAGAAACAACAACAGCAAAGTTTTGAGTTAGAAGCATTAACCCACCAGAGGTTACAGATGATTAATCACTTTCACCACCACCTTCCACATGGGGATTCTGCTATGGAGAAGTCCGTTTGGGACATTTAA 1608 0.4571 MSKISGDEGSFSSANSVEEVHEESEQQQPQKRHGSSSGACNTNRSSNQQQQQQQATKKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRASNEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHHKTCGTREYKCDCGTIFARRDSFITHRAFCDALTEENNRVNPSLTSGAGMAPSLQNELQELMATMPLSTSPNNVVPEFNNNYESSKRPLKSLSQEHLVPMPFKSMSMRGCMSSTTSGTLFGGPKNMSLPSSSTLQLSSNNSHTFNYFQDTKNSAASAHMSATALLQKAAQMGAAASNNSINSPTMMQKSFVSGIIGPSSYDPFHHPHPDDQSHMPGIRDAGAFTNQFFHKGQQEMSAILDSNTSDMGILGAMFMGSDHNEGVMKNVEQEVGASTSSFIRRRDVSEGNPTGASRIHDFLGVGGATSRAGSLHEPQKQQQQSFELEALTHQRLQMINHFHHHLPHGDSAMEKSVWDI* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1210 535 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Vra8g1210 535 Gene3D Classic Zinc Finger 141 220 - -
Vra8g1210 535 SMART c2h2final6 127 157 IPR013087 -
Vra8g1210 535 SMART c2h2final6 162 182 IPR013087 -
Vra8g1210 535 SMART c2h2final6 86 108 IPR013087 -
Vra8g1210 535 Pfam Zinc finger, C2H2 type 86 108 IPR013087 -
Vra8g1210 535 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 518 - -
Vra8g1210 535 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 518 - -
Vra8g1210 535 Gene3D Classic Zinc Finger 63 131 - -
Vra8g1210 535 SUPERFAMILY beta-beta-alpha zinc fingers 85 182 IPR036236 -
Vra8g1210 535 MobiDBLite consensus disorder prediction 1 17 - -
Vra8g1210 535 MobiDBLite consensus disorder prediction 30 60 - -
Vra8g1210 535 MobiDBLite consensus disorder prediction 1 71 - -
Vra8g1210 535 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1210 Vra-Chr8 27467605 27470740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1210 35 360 IDZ Gene Family AT3G50700 53.198 1.94e-113 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra8g1210 zf-C2H2 0.0055 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1210 - - gmx:100797943 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1210 8 27467605 27470740 Vra8g1210 8 27467605 27470740 ECH
Vra3g0402 3 4676575 4679133 Vra8g1210 8 27467605 27470740 PCT