Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1208 ATGGACTTGTACGGTCGGACCCCCGCCAGGAATGGATCCAACCCGGTCAGCCAATCGGAATGGCGCTCACCGGCCACCGACACTGCTCTCCAAGAATCCATGTGGCATTTAACGTTGGGTGGTGGGGAATCTTACCCGGAGCGGCTCGGCGTGCCCAATTGTGTGTATTACATGCGAACTGGTGTGTGTGGATATGGAGGCAGGTGTCGTTACAATCATCCTCGTGACCGTGCTGCGGTTGCTGCGGCAGTAAGAGCTACAGGGGAGTACCCAGAAAGGGTGGGGGAACCTCCGTGTCAGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCTGCTGGCACGTCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACAGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCTTCGAGCTTGAGAGTGGCTAGGCCTCCTATGTTGCCTGGTTCATATGTTCAAGGGGCTTATGCTCCTGTACTTCTTTCTCCAGGGGTTGTCCCATTTCCCGGATGGAGTCCTTATTCGGCACCTGTAAGTCCCGTGCCATCTCCTGGTGCTCAACCTGCCGTTGGGGGTACATCTTTATATGGAATGACCCAGTTATCGTCACCAACATCAGCTTTTGCAAGACCATATACTCCCCTTCCCTCTACCTCTGGCCCTTTAGGAAGCAGCCTGAAGGAACAATTATTTCCCGAAAGACCTGGTGAACCTGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCACCATCCTCGGGATCATATTGTGGCACGGCCACTTCTTAACCCTGTTGGACTTCCTTTACGTCCGGGTGTACAACCTTGCGCATTTTATTTGCAAAATGGACATTGCAAGTTTGGCTCGACGTGCAAATTTGACCATCCTCTGGGATCCATGAGATACAGTCCATCAGCATCTTCTCTCATTGATGTGCCAGTTACTCCATATCCAGTTGGTTCTTTGCTGTCTCAGCTGGCCCCTTCAACAACCTCTTCAGAGCTTCGGCCTGAACTGATGTCAGGGTCCAAAAAGGAATCCTTTTCGGCCAGAATACCTTCTGGAAACAGTTCCGGTACCACTGTGGGTTTAATATTTTCACAAGGTGGGTCTGTTTCCCTATCTGATGTGCAACTCTCAAGTCAGAGTTCTGCCTCTGCTAGCAGTAGCAGAAGCACCAGACAAAGTGGTGAGATACGTTGA 1293 0.5004 MDLYGRTPARNGSNPVSQSEWRSPATDTALQESMWHLTLGGGESYPERLGVPNCVYYMRTGVCGYGGRCRYNHPRDRAAVAAAVRATGEYPERVGEPPCQGEKECSYYLKTGQCKFGISCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLPEQYGGASSSLRVARPPMLPGSYVQGAYAPVLLSPGVVPFPGWSPYSAPVSPVPSPGAQPAVGGTSLYGMTQLSSPTSAFARPYTPLPSTSGPLGSSLKEQLFPERPGEPECQYYLRTGDCKFGLACRYHHPRDHIVARPLLNPVGLPLRPGVQPCAFYLQNGHCKFGSTCKFDHPLGSMRYSPSASSLIDVPVTPYPVGSLLSQLAPSTTSSELRPELMSGSKKESFSARIPSGNSSGTTVGLIFSQGGSVSLSDVQLSSQSSASASSSRSTRQSGEIR* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1208 430 MobiDBLite consensus disorder prediction 10 27 - -
Vra8g1208 430 ProSiteProfiles Zinc finger C3H1-type profile. 100 127 IPR000571 GO:0046872
Vra8g1208 430 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Vra8g1208 430 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 51 75 IPR000571 GO:0046872
Vra8g1208 430 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 326 IPR000571 GO:0046872
Vra8g1208 430 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 258 283 IPR000571 GO:0046872
Vra8g1208 430 ProSiteProfiles Zinc finger C3H1-type profile. 256 284 IPR000571 GO:0046872
Vra8g1208 430 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Vra8g1208 430 ProSiteProfiles Zinc finger C3H1-type profile. 300 328 IPR000571 GO:0046872
Vra8g1208 430 SUPERFAMILY CCCH zinc finger 102 127 IPR036855 GO:0046872
Vra8g1208 430 Gene3D - 49 136 - -
Vra8g1208 430 Gene3D - 254 338 - -
Vra8g1208 430 MobiDBLite consensus disorder prediction 407 430 - -
Vra8g1208 430 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Vra8g1208 430 SMART c3hfinal6 256 283 IPR000571 GO:0046872
Vra8g1208 430 SMART c3hfinal6 300 327 IPR000571 GO:0046872
Vra8g1208 430 SMART c3hfinal6 101 126 IPR000571 GO:0046872
Vra8g1208 430 SUPERFAMILY CCCH zinc finger 51 77 IPR036855 GO:0046872
Vra8g1208 430 SUPERFAMILY CCCH zinc finger 302 331 IPR036855 GO:0046872
Vra8g1208 430 MobiDBLite consensus disorder prediction 1 27 - -
Vra8g1208 430 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 100 414 - -
Vra8g1208 430 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 18 100 - -
Vra8g1208 430 PANTHER PROTEIN PHOSPHATASE RELATED 18 100 - -
Vra8g1208 430 PANTHER PROTEIN PHOSPHATASE RELATED 100 414 - -
Vra8g1208 430 SUPERFAMILY CCCH zinc finger 261 284 IPR036855 GO:0046872
Vra8g1208 430 MobiDBLite consensus disorder prediction 356 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1208 Vra-Chr8 27434233 27439172 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1208 20 376 C2H2 Transcription Factor Family AT5G18550 46.081 4.66e-102 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra8g1208 zf-CCCH 9.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1208 - - gmx:100812475 671.774