Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra8g1208 | ATGGACTTGTACGGTCGGACCCCCGCCAGGAATGGATCCAACCCGGTCAGCCAATCGGAATGGCGCTCACCGGCCACCGACACTGCTCTCCAAGAATCCATGTGGCATTTAACGTTGGGTGGTGGGGAATCTTACCCGGAGCGGCTCGGCGTGCCCAATTGTGTGTATTACATGCGAACTGGTGTGTGTGGATATGGAGGCAGGTGTCGTTACAATCATCCTCGTGACCGTGCTGCGGTTGCTGCGGCAGTAAGAGCTACAGGGGAGTACCCAGAAAGGGTGGGGGAACCTCCGTGTCAGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCTGCTGGCACGTCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACAGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCTTCGAGCTTGAGAGTGGCTAGGCCTCCTATGTTGCCTGGTTCATATGTTCAAGGGGCTTATGCTCCTGTACTTCTTTCTCCAGGGGTTGTCCCATTTCCCGGATGGAGTCCTTATTCGGCACCTGTAAGTCCCGTGCCATCTCCTGGTGCTCAACCTGCCGTTGGGGGTACATCTTTATATGGAATGACCCAGTTATCGTCACCAACATCAGCTTTTGCAAGACCATATACTCCCCTTCCCTCTACCTCTGGCCCTTTAGGAAGCAGCCTGAAGGAACAATTATTTCCCGAAAGACCTGGTGAACCTGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCACCATCCTCGGGATCATATTGTGGCACGGCCACTTCTTAACCCTGTTGGACTTCCTTTACGTCCGGGTGTACAACCTTGCGCATTTTATTTGCAAAATGGACATTGCAAGTTTGGCTCGACGTGCAAATTTGACCATCCTCTGGGATCCATGAGATACAGTCCATCAGCATCTTCTCTCATTGATGTGCCAGTTACTCCATATCCAGTTGGTTCTTTGCTGTCTCAGCTGGCCCCTTCAACAACCTCTTCAGAGCTTCGGCCTGAACTGATGTCAGGGTCCAAAAAGGAATCCTTTTCGGCCAGAATACCTTCTGGAAACAGTTCCGGTACCACTGTGGGTTTAATATTTTCACAAGGTGGGTCTGTTTCCCTATCTGATGTGCAACTCTCAAGTCAGAGTTCTGCCTCTGCTAGCAGTAGCAGAAGCACCAGACAAAGTGGTGAGATACGTTGA | 1293 | 0.5004 | MDLYGRTPARNGSNPVSQSEWRSPATDTALQESMWHLTLGGGESYPERLGVPNCVYYMRTGVCGYGGRCRYNHPRDRAAVAAAVRATGEYPERVGEPPCQGEKECSYYLKTGQCKFGISCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLPEQYGGASSSLRVARPPMLPGSYVQGAYAPVLLSPGVVPFPGWSPYSAPVSPVPSPGAQPAVGGTSLYGMTQLSSPTSAFARPYTPLPSTSGPLGSSLKEQLFPERPGEPECQYYLRTGDCKFGLACRYHHPRDHIVARPLLNPVGLPLRPGVQPCAFYLQNGHCKFGSTCKFDHPLGSMRYSPSASSLIDVPVTPYPVGSLLSQLAPSTTSSELRPELMSGSKKESFSARIPSGNSSGTTVGLIFSQGGSVSLSDVQLSSQSSASASSSRSTRQSGEIR* | 431 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra8g1208 | 430 | MobiDBLite | consensus disorder prediction | 10 | 27 | - | - | |
Vra8g1208 | 430 | ProSiteProfiles | Zinc finger C3H1-type profile. | 100 | 127 | IPR000571 | GO:0046872 | |
Vra8g1208 | 430 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 101 | 126 | IPR000571 | GO:0046872 | |
Vra8g1208 | 430 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 51 | 75 | IPR000571 | GO:0046872 | |
Vra8g1208 | 430 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 302 | 326 | IPR000571 | GO:0046872 | |
Vra8g1208 | 430 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 258 | 283 | IPR000571 | GO:0046872 | |
Vra8g1208 | 430 | ProSiteProfiles | Zinc finger C3H1-type profile. | 256 | 284 | IPR000571 | GO:0046872 | |
Vra8g1208 | 430 | ProSiteProfiles | Zinc finger C3H1-type profile. | 48 | 76 | IPR000571 | GO:0046872 | |
Vra8g1208 | 430 | ProSiteProfiles | Zinc finger C3H1-type profile. | 300 | 328 | IPR000571 | GO:0046872 | |
Vra8g1208 | 430 | SUPERFAMILY | CCCH zinc finger | 102 | 127 | IPR036855 | GO:0046872 | |
Vra8g1208 | 430 | Gene3D | - | 49 | 136 | - | - | |
Vra8g1208 | 430 | Gene3D | - | 254 | 338 | - | - | |
Vra8g1208 | 430 | MobiDBLite | consensus disorder prediction | 407 | 430 | - | - | |
Vra8g1208 | 430 | SMART | c3hfinal6 | 48 | 75 | IPR000571 | GO:0046872 | |
Vra8g1208 | 430 | SMART | c3hfinal6 | 256 | 283 | IPR000571 | GO:0046872 | |
Vra8g1208 | 430 | SMART | c3hfinal6 | 300 | 327 | IPR000571 | GO:0046872 | |
Vra8g1208 | 430 | SMART | c3hfinal6 | 101 | 126 | IPR000571 | GO:0046872 | |
Vra8g1208 | 430 | SUPERFAMILY | CCCH zinc finger | 51 | 77 | IPR036855 | GO:0046872 | |
Vra8g1208 | 430 | SUPERFAMILY | CCCH zinc finger | 302 | 331 | IPR036855 | GO:0046872 | |
Vra8g1208 | 430 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Vra8g1208 | 430 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 | 100 | 414 | - | - | |
Vra8g1208 | 430 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 | 18 | 100 | - | - | |
Vra8g1208 | 430 | PANTHER | PROTEIN PHOSPHATASE RELATED | 18 | 100 | - | - | |
Vra8g1208 | 430 | PANTHER | PROTEIN PHOSPHATASE RELATED | 100 | 414 | - | - | |
Vra8g1208 | 430 | SUPERFAMILY | CCCH zinc finger | 261 | 284 | IPR036855 | GO:0046872 | |
Vra8g1208 | 430 | MobiDBLite | consensus disorder prediction | 356 | 387 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra8g1208 | Vra-Chr8 | 27434233 | 27439172 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra8g1208 | 20 | 376 | C2H2 Transcription Factor Family | AT5G18550 | 46.081 | 4.66e-102 | 309 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Vra8g1208 | zf-CCCH | 9.1e-09 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra8g1208 | - | - | gmx:100812475 | 671.774 |